Package chemaxon.standardizer.configuration

Class ConfigurationUtility

java.lang.Object

chemaxon.standardizer.configuration.ConfigurationUtility

@PublicAPI
public class ConfigurationUtility
extends Object

Utility to manage standardizer configuration

Since:

6.0

Field Summary

Fields

Modifier and Type	Field	Description
static final String	FINAL_CLEAN_ID	Deprecated, for removal: This API element is subject to removal in a future version. It's not required anymore.

Constructor Summary

Constructors

Constructor	Description
ConfigurationUtility()

Method Summary

Modifier and Type	Method	Description
static void	filterGroups(StandardizerConfiguration configuration, String[] groups)	Filters the action list of a configuration to a configuration containing only the actions that are in the target groups (or in all groups).
static void	setFinalClean(StandardizerConfiguration configuration)	Deprecated, for removal: This API element is subject to removal in a future version. It's not required anymore.
static void	setFinalClean(StandardizerConfiguration configuration, int dim)	Deprecated, for removal: This API element is subject to removal in a future version. It's not required anymore.
static void	setFinalClean(StandardizerConfiguration configuration, int dim, boolean partial)	Deprecated, for removal: This API element is subject to removal in a future version. It's not required anymore.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

FINAL_CLEAN_ID

@Deprecated(forRemoval=true)
@SubjectToRemoval(date=JUL_01_2025)
public static final String FINAL_CLEAN_ID

Deprecated, for removal: This API element is subject to removal in a future version.

It's not required anymore.

Final clean task ID.

See Also:

• Constant Field Values

Constructor Details

ConfigurationUtility

public ConfigurationUtility()

Method Details

filterGroups

public static void filterGroups(StandardizerConfiguration configuration,
 String[] groups)

Filters the action list of a configuration to a configuration containing only the actions that are in the target groups (or in all groups).

Parameters:

configuration - the target configuration

groups - the target groups

setFinalClean

@Deprecated(forRemoval=true)
@SubjectToRemoval(date=JUL_01_2025)
public static void setFinalClean(StandardizerConfiguration configuration)
                          throws IllegalArgumentException

Deprecated, for removal: This API element is subject to removal in a future version.

It's not required anymore.

Sets final clean task: original molecule dimension, partial, optional.

Parameters:

configuration - the target standardizer configuration

Throws:

IllegalArgumentException - on invalid configuration

setFinalClean

@Deprecated(forRemoval=true)
@SubjectToRemoval(date=JUL_01_2025)
public static void setFinalClean(StandardizerConfiguration configuration,
 int dim)
                          throws IllegalArgumentException

Deprecated, for removal: This API element is subject to removal in a future version.

It's not required anymore.

Sets final clean task: partial, target-only.

Parameters:

configuration - the target standardizer configuration

dim - is the clean dimension, set -1 for the original molecule dimension

Throws:

IllegalArgumentException - on invalid configuration

setFinalClean

@Deprecated(forRemoval=true)
@SubjectToRemoval(date=JUL_01_2025)
public static void setFinalClean(StandardizerConfiguration configuration,
 int dim,
 boolean partial)
                          throws IllegalArgumentException

Deprecated, for removal: This API element is subject to removal in a future version.

It's not required anymore.

Sets final clean task: target-only.

Parameters:

configuration - the target standardizer configuration

dim - is the clean dimension, currently partial clean only works in 2D - if set to 3 then full clean is performed

partial - is true if only the changing atoms should be cleaned, false if full clean is needed - if the clean dimension is different from the molecule dimension then always full clean is performed

Throws:

IllegalArgumentException - on invalid configuration