chemaxon.fixers

Interface StructureFixer

All Known Implementing Classes:

AbsentChiralFlagFixer, AbsoluteStereoFixer, AbstractStructureFixer, AddChiralFlagFixer, BondAngleFixer, BondLengthFixer, CleanFixer, ClearWedgeFixer, ContractGroupFixer, ConvertAliasToGroupFixer, ConvertPseudoToGroupFixer, ConvertToAtomFixer, ConvertToCarbonFixer, ConvertToCrossedDoubleBondFixer, ConvertToElementalFormFixer, ConvertToIonicFormFixer, ConvertToPlainDoubleBondFixer, ConvertToSingleBondFixer, ConvertToWigglyDoubleBondFixer, CrossedDoubleBondFixer, DearomatizeFixer, DistanceBasedMetalloceneFixer, ExpandGroupFixer, ExplicitHydrogenFixer, FlipWedgeBondFixer, IsotopeFixer, MapMoleculeFixer, MapReactionFixer, MetalloceneFixer, NeutralizeChargeFixer, PartialCleanFixer, RearomatizeFixer, RearrangeWedgesFixer, RemoveAliasFixer, RemoveAtomFixer, RemoveAtomMapFixer, RemoveAtomQueryPropertyFixer, RemoveAtomValueFixer, RemoveAttachedDataFixer, RemoveBondFixer, RemoveBracketsFixer, RemoveChiralFlagFixer, RemoveExplicitHydrogenFixer, RemoveInvalidChiralFlagFixer, RemoveRadicalFixer, RemoveReactingCenterBondMarkFixer, RemoveStereoCareBoxFixer, RemoveStereoInversionRetentionMarkFixer, RemoveUnreferencedRgroupDefinitionsFixer, RemoveValencePropertyFixer, RemoveZCoordinateFixer, RgroupAttachmentFixer, SubstructureFixer, UngroupFixer, ValenceFixer, WedgeCleanFixer, WigglyDoubleBondFixer

@PublicAPI
public interface StructureFixer

A StructureFixer can fix a Molecule problem identified by a StructureCheckerResult

Since:

Marvin 5.3

Version:

5.9

Author:

Attila Szabo

Method Summary

Modifier and Type	Method and Description
boolean	fix(StructureCheckerResult result) Fixes one molecule problem identified by the result
java.lang.String	getDescription() Deprecated.
StructureFixerDescriptor	getDescriptor() Gets the descriptor object of the fixer.
java.lang.String	getName() Deprecated.
void	setDescription(java.lang.String description) Deprecated.
void	setName(java.lang.String Name) Deprecated.

Method Detail

fix

boolean fix(StructureCheckerResult result)

Fixes one molecule problem identified by the result

Parameters:

result - is an instance of StructureCheckerResult which identifies the problem

Returns:

true if the fix was successful false otherwise

getDescription

@Deprecated
java.lang.String getDescription()

Deprecated.

Returns:

the description of the fixer

setDescription

@Deprecated
void setDescription(java.lang.String description)

Deprecated.

Sets the description of the fixer

Parameters:

description - is a String instance

getName

@Deprecated
java.lang.String getName()

Deprecated.

Returns:

the name of the fixer

setName

@Deprecated
void setName(java.lang.String Name)

Deprecated.

Sets the name of the fixer

Parameters:

Name - is a String instance

getDescriptor

StructureFixerDescriptor getDescriptor()

Gets the descriptor object of the fixer.

Returns:

the descriptor object