chemaxon.formats.recognizer

Class SMILESRecognizer

java.lang.Object

chemaxon.formats.recognizer.Recognizer

chemaxon.formats.recognizer.SMILESRecognizer

Deprecated.

as of Marvin 2014.07.21.0 intended for internal use only

@PublicAPI
 @Deprecated
public class SMILESRecognizer
extends Recognizer

SMILES/SMARTS/CxSMILES/CxSMARTS format recognizer.

Since:

Marvin 5.0, 06/07/2007

Version:

5.3, 09/28/2009

Author:

Peter Csizmadia, Andras Volford

Field Summary

Fields inherited from class chemaxon.formats.recognizer.Recognizer

needsMore

Constructor Summary

Constructors

Constructor and Description
SMILESRecognizer() Deprecated.

Method Summary

Modifier and Type	Method and Description
static boolean	canBeSMARTS(java.lang.String s) Deprecated. Tests whether a string can be SMARTS.
static boolean	canBeSMILES(java.lang.String s) Deprecated. Tests whether a string can be SMILES.
java.lang.String	guessFormat(java.lang.String line) Deprecated. MODIFIING THIS METHOD REQUIRES TO UPDATE THE Recognizer.tryToRecognize(String, int, RecognizerList) METHOD AS WELL!!
static boolean	isComment(java.lang.String s) Deprecated.
static boolean	isCxSMILESLine(java.lang.String s) Deprecated. Checks if a line is a ChemAxon Extended SMILES/SMARTS format.
chemaxon.common.util.Pair<java.lang.Boolean,java.util.Collection<java.lang.String>>	tryToRecognize(java.lang.String line, int lineNumber) Deprecated. Checks whether the parameter line can be part of a valid (format specified) file on the given file position.

Methods inherited from class chemaxon.formats.recognizer.Recognizer

getLastProcessedLineNum, isLastLine, needsMore, tryToRecognize

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SMILESRecognizer

public SMILESRecognizer()

Deprecated.

Method Detail

tryToRecognize

public chemaxon.common.util.Pair<java.lang.Boolean,java.util.Collection<java.lang.String>> tryToRecognize(java.lang.String line,
                                                                                                          int lineNumber)

Deprecated.

Description copied from class: Recognizer

Checks whether the parameter line can be part of a valid (format specified) file on the given file position.

Overrides:

tryToRecognize in class Recognizer

Parameters:

line - the line string

lineNumber - the position of the line

Returns:

a Pair of which second parameter gives the format name collection that is:

• Recognized to be excluded if the first parameter is false
• Positively recognized if the first parameter is true

canBeSMILES

public static boolean canBeSMILES(java.lang.String s)

Deprecated.

Tests whether a string can be SMILES.

Parameters:

s - the input string

Returns:

true if it can be, false if it cannot be SMILES

canBeSMARTS

public static boolean canBeSMARTS(java.lang.String s)

Deprecated.

Tests whether a string can be SMARTS.

Parameters:

s - the input string

Returns:

true if it can be, false if it cannot be SMARTS.

isComment

public static boolean isComment(java.lang.String s)

Deprecated.

isCxSMILESLine

public static boolean isCxSMILESLine(java.lang.String s)

Deprecated.

Checks if a line is a ChemAxon Extended SMILES/SMARTS format.

Parameters:

s - the input string

Returns:

true if it is cxsmiles, false otherwise

guessFormat

public java.lang.String guessFormat(java.lang.String line)

Deprecated.

MODIFIING THIS METHOD REQUIRES TO UPDATE THE Recognizer.tryToRecognize(String, int, RecognizerList) METHOD AS WELL!!

Overrides:

guessFormat in class Recognizer

Parameters:

line - the line

Returns:

the name of the most likely format, that this recognizer can recognize, or null the format could not be decided