chemaxon.marvin.alignment

Enum AlignmentProperties.DegreeOfFreedomType

java.lang.Object

java.lang.Enum<AlignmentProperties.DegreeOfFreedomType>

chemaxon.marvin.alignment.AlignmentProperties.DegreeOfFreedomType

All Implemented Interfaces:

java.io.Serializable, java.lang.Comparable<AlignmentProperties.DegreeOfFreedomType>

Enclosing class:

AlignmentProperties

public static enum AlignmentProperties.DegreeOfFreedomType
extends java.lang.Enum<AlignmentProperties.DegreeOfFreedomType>

Enum Constant Summary

Enum Constants

Enum Constant and Description
FIXED Do not move this molecule
TRANSLATE_ROTATE Translate and rotate only as a rigid body.
TRANSLATE_ROTATE_FLEXIBLE Translate and rotate, and tweak rotatable bonds to adapt conformation.
TRANSLATE_ROTATE_FLEXIBLE_EXTRA As of TRANSLATE_ROTATE_FLEXIBLE with an extension of some otherwise rigid bond is kept flexible.(e.g.: double or amide bonds).

Method Summary

Modifier and Type	Method and Description
static AlignmentProperties.DegreeOfFreedomType	valueOf(java.lang.String name) Returns the enum constant of this type with the specified name.
static AlignmentProperties.DegreeOfFreedomType[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

FIXED

public static final AlignmentProperties.DegreeOfFreedomType FIXED

Do not move this molecule

TRANSLATE_ROTATE

public static final AlignmentProperties.DegreeOfFreedomType TRANSLATE_ROTATE

Translate and rotate only as a rigid body.

TRANSLATE_ROTATE_FLEXIBLE

public static final AlignmentProperties.DegreeOfFreedomType TRANSLATE_ROTATE_FLEXIBLE

Translate and rotate, and tweak rotatable bonds to adapt conformation.

TRANSLATE_ROTATE_FLEXIBLE_EXTRA

public static final AlignmentProperties.DegreeOfFreedomType TRANSLATE_ROTATE_FLEXIBLE_EXTRA

As of TRANSLATE_ROTATE_FLEXIBLE with an extension of some otherwise rigid bond is kept flexible.(e.g.: double or amide bonds). So the cis amide in second molecule can be tweaked to trans if it is favored by the alignment.

Method Detail

values

public static AlignmentProperties.DegreeOfFreedomType[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (AlignmentProperties.DegreeOfFreedomType c : AlignmentProperties.DegreeOfFreedomType.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static AlignmentProperties.DegreeOfFreedomType valueOf(java.lang.String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

java.lang.IllegalArgumentException - if this enum type has no constant with the specified name

java.lang.NullPointerException - if the argument is null