chemaxon.standardizer.actions

Class AromatizeAction

java.lang.Object

chemaxon.standardizer.AbstractStandardizerAction

chemaxon.standardizer.actions.AromatizeAction

All Implemented Interfaces:

chemaxon.license.Licensable, StandardizerAction, java.beans.PropertyChangeListener, java.lang.Cloneable, java.util.EventListener

@PublicAPI
public final class AromatizeAction
extends AbstractStandardizerAction

Aromatization standardizer action

Since:

5.11

Author:

Imre Barna

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	AromatizeAction.Type Type of aromatization

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	TYPE_KEY Key of type for parsing and property change

Fields inherited from class chemaxon.standardizer.AbstractStandardizerAction

CONFIG_PATH_KEY, FORMAT_KEY, ID_KEY, support

Constructor Summary

Constructors

Constructor and Description
AromatizeAction(java.util.Map<java.lang.String,java.lang.String> params) Initializes the action with parameters

Method Summary

Modifier and Type	Method and Description
AromatizeAction	clone()
AromatizeAction.Type	getType() Gets the type of aromatization
void	setType(AromatizeAction.Type type) Sets the type of aromatization
protected Changes	standardize1(Molecule molecule) This method contains the current standardization mechanism.
java.lang.String	toString()

Methods inherited from class chemaxon.standardizer.AbstractStandardizerAction

addPropertyChangeListener, addPropertyChangeListener, cloneItem, getComponents, getDescriptor, getID, isActive, isAvailable, isLicensed, isValid, propertyChange, removePropertyChangeListener, removePropertyChangeListener, setActive, setID, setLicenseEnvironment, setValid, standardize

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

TYPE_KEY

public static final java.lang.String TYPE_KEY

Key of type for parsing and property change

See Also:

Constant Field Values

Constructor Detail

AromatizeAction

public AromatizeAction(java.util.Map<java.lang.String,java.lang.String> params)

Initializes the action with parameters

Parameters:

params - the parameters of the action

Method Detail

setType

public void setType(AromatizeAction.Type type)

Sets the type of aromatization

Parameters:

type - the type of aromatization

getType

public AromatizeAction.Type getType()

Gets the type of aromatization

Returns:

the type of aromatization

standardize1

protected Changes standardize1(Molecule molecule)

Description copied from class: AbstractStandardizerAction

This method contains the current standardization mechanism. Descendants needs to implement this method.
Special molecules containing more components (e.g. RgMolecule, RxnMolecule) are decomponented by the method AbstractStandardizerAction.getComponents(Molecule), and AbstractStandardizerAction.standardize1(Molecule) method is called on each component, before applied on the original molecule. If a descendant does not want this to occur, this method must be overridden.
Logs of standardization should be generated to a Logger, that can be collected by using StandardizerLogger.getLogger() method.

Specified by:

standardize1 in class AbstractStandardizerAction

Parameters:

molecule - the Molecule instance to be standardized

Returns:

the changes applied on the molecule during the standardization process

clone

public AromatizeAction clone()
                      throws java.lang.CloneNotSupportedException

Overrides:

clone in class AbstractStandardizerAction

Throws:

java.lang.CloneNotSupportedException

toString

public java.lang.String toString()

Overrides:

toString in class AbstractStandardizerAction