chemaxon.standardizer.actions

Class ExpandSgroupsAction

java.lang.Object

chemaxon.standardizer.AbstractStandardizerAction

chemaxon.standardizer.actions.AbstractSgroupAction

chemaxon.standardizer.actions.ExpandSgroupsAction

All Implemented Interfaces:

chemaxon.license.Licensable, StandardizerAction, java.beans.PropertyChangeListener, java.lang.Cloneable, java.util.EventListener

@PublicAPI
public class ExpandSgroupsAction
extends chemaxon.standardizer.actions.AbstractSgroupAction

Standardizer action expanding s-groups of the target molecule

Since:

6.0

Author:

Imre Barna

Field Summary

Fields

Modifier and Type	Field and Description
protected java.lang.String	excludeString

Fields inherited from class chemaxon.standardizer.actions.AbstractSgroupAction

changes, EXCLUDE_KEY

Fields inherited from class chemaxon.standardizer.AbstractStandardizerAction

CONFIG_PATH_KEY, FORMAT_KEY, ID_KEY, support

Constructor Summary

Constructors

Constructor and Description
ExpandSgroupsAction(java.util.Map<java.lang.String,java.lang.String> params) Initializes the action

Method Summary

Modifier and Type	Method and Description
java.lang.String	getExcludeString()
void	setExcludeString(java.lang.String excludeString)
protected Changes	standardize1(Molecule molecule) This method contains the current standardization mechanism.

Methods inherited from class chemaxon.standardizer.actions.AbstractSgroupAction

clone, parseGroupNames, toString

Methods inherited from class chemaxon.standardizer.AbstractStandardizerAction

addPropertyChangeListener, addPropertyChangeListener, cloneItem, getComponents, getDescriptor, getID, isActive, isAvailable, isLicensed, isValid, propertyChange, removePropertyChangeListener, removePropertyChangeListener, setActive, setID, setLicenseEnvironment, setValid, standardize

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

excludeString

protected java.lang.String excludeString

Constructor Detail

ExpandSgroupsAction

public ExpandSgroupsAction(java.util.Map<java.lang.String,java.lang.String> params)

Initializes the action

Parameters:

params - the parameters of the action

Method Detail

standardize1

protected Changes standardize1(Molecule molecule)

Description copied from class: AbstractStandardizerAction

This method contains the current standardization mechanism. Descendants needs to implement this method.
Special molecules containing more components (e.g. RgMolecule, RxnMolecule) are decomponented by the method AbstractStandardizerAction.getComponents(Molecule), and AbstractStandardizerAction.standardize1(Molecule) method is called on each component, before applied on the original molecule. If a descendant does not want this to occur, this method must be overridden.
Logs of standardization should be generated to a Logger, that can be collected by using StandardizerLogger.getLogger() method.

Specified by:

standardize1 in class AbstractStandardizerAction

Parameters:

molecule - the Molecule instance to be standardized

Returns:

the changes applied on the molecule during the standardization process

setExcludeString

public void setExcludeString(java.lang.String excludeString)

Specified by:

setExcludeString in class chemaxon.standardizer.actions.AbstractSgroupAction

getExcludeString

public java.lang.String getExcludeString()

Specified by:

getExcludeString in class chemaxon.standardizer.actions.AbstractSgroupAction