Package chemaxon.checkers

Class RareElementChecker

java.lang.Object

chemaxon.checkers.AbstractStructureChecker

chemaxon.checkers.ComponentChecker<MolAtom>

chemaxon.checkers.AtomChecker

chemaxon.checkers.AtomTypeChecker

chemaxon.checkers.RareElementChecker

All Implemented Interfaces:

StructureChecker, chemaxon.license.Licensable, PropertyChangeListener, Cloneable, EventListener

@PublicApi
public class RareElementChecker
extends AtomTypeChecker

A descendant of AtomTypeChecker detecting structures containing elements which are usually rare in organic/drug molecules. The following elemts are considered common: H, Li, Na, K, Mg, Ca, B, C, N, O, F, Cl, Br, I, Al, P, S, Cr, Mn, Fe, Co, Ni, Cu, Zn. All other elements are considered rare.

Since:

Marvin 5.4

Field Summary

Fields inherited from class chemaxon.checkers.AtomTypeChecker

PROPERTY_KEY_TYPES, types

Fields inherited from class chemaxon.checkers.AbstractStructureChecker

errorType, propertyChangeSupport

Fields inherited from interface chemaxon.checkers.StructureChecker

PROPERTY_KEY_VALID

Constructor Summary

Constructors

Constructor	Description
RareElementChecker()	Default constructor

Method Summary

Modifier and Type	Method	Description
protected boolean	check(Molecule molecule, MolAtom component)	Checks if the component with index i has problem

Methods inherited from class chemaxon.checkers.AtomTypeChecker

getTypes, setTypes

Methods inherited from class chemaxon.checkers.AtomChecker

createResult, getComponent, getComponentCount

Methods inherited from class chemaxon.checkers.ComponentChecker

check1, initialize

Methods inherited from class chemaxon.checkers.AbstractStructureChecker

addPropertyChangeListener, addPropertyChangeListener, check, clone, cloneItem, convertResult, equals, expandMolecule, getDescription, getDescriptor, getEditorClassName, getErrorCode, getErrorDescription, getErrorType, getHelpText, getIcon, getLocalMenuName, getName, hashCode, isAvailable, isLicensed, isValid, propertyChange, removePropertyChangeListener, removePropertyChangeListener, setDescription, setHelpText, setIcon, setLicenseEnvironment, setLocalMenuName, setMoreErrorMessage, setName, setNoErrorMessage, setOneErrorMessage, toString

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Details

RareElementChecker

public RareElementChecker()

Default constructor

Method Details

check

protected boolean check(Molecule molecule,
 MolAtom component)

Description copied from class: ComponentChecker

Checks if the component with index i has problem

Overrides:

check in class AtomTypeChecker

Parameters:

molecule - is a Molecule instance

component - the current component to check

Returns:

true if the component has problem, false otherwise