java.lang.Object

chemaxon.formats.MolConverter.Builder

chemaxon.formats.MolConverter.Options

Enclosing class:: MolConverter

@Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) public static class MolConverter.Options extends MolConverter.Builder

Deprecated, for removal: This API element is subject to removal in a future version.

as of Marvin 5.2.3, use MolConverter.Builder instead.

Constructor Summary

Constructors

Constructor

Description

Options()

Deprecated, for removal: This API element is subject to removal in a future version.
Method Summary

Modifier and Type

Method

Description

void

addInput(File f, String opts)

Deprecated, for removal: This API element is subject to removal in a future version.

void

addInput(InputStream is, String opts)

Deprecated, for removal: This API element is subject to removal in a future version.

void

addInput(String fname, String opts)

Deprecated, for removal: This API element is subject to removal in a future version.

MolConverter

build()

Deprecated, for removal: This API element is subject to removal in a future version.

MolConverter.Builder

clean(int dim)

Deprecated, for removal: This API element is subject to removal in a future version.

MolConverter.Builder

clean(int dim, String opts)

Deprecated, for removal: This API element is subject to removal in a future version.

void

clear()

Deprecated, for removal: This API element is subject to removal in a future version.

protected Object

clone()

Deprecated, for removal: This API element is subject to removal in a future version.

int

getInputCount()

Deprecated, for removal: This API element is subject to removal in a future version.

void

setEncodings(String enc)

Deprecated, for removal: This API element is subject to removal in a future version.

void

setFields(String[] fields)

Deprecated, for removal: This API element is subject to removal in a future version.

void

setOutput(File f, String fmtopts)

Deprecated, for removal: This API element is subject to removal in a future version.

void

setOutput(OutputStream out, String fmtopts)

Deprecated, for removal: This API element is subject to removal in a future version.

void

setOutput(String fname, String fmtopts)

Deprecated, for removal: This API element is subject to removal in a future version.

void

setOutputFlags(int outflags)

Deprecated, for removal: This API element is subject to removal in a future version.

Methods inherited from class java.lang.Object
equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- Options
  
  @Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) public Options()
  
  Deprecated, for removal: This API element is subject to removal in a future version.
Method Details
- addInput
  
  @Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) public void addInput(File f, String opts)
  
  Deprecated, for removal: This API element is subject to removal in a future version.
  
  Description copied from class: MolConverter.Builder
  
  Adds an input file.
  
  Overrides:
  
  addInput in class MolConverter.Builder
  
  Parameters:
  
  f - the file
  
  opts - import options or null
- addInput
  
  @Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) public void addInput(InputStream is, String opts)
  
  Deprecated, for removal: This API element is subject to removal in a future version.
  
  Description copied from class: MolConverter.Builder
  
  Adds an input stream.
  
  Overrides:
  
  addInput in class MolConverter.Builder
  
  Parameters:
  
  is - the input stream
  
  opts - import options or null
- addInput
  
  @Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) public void addInput(String fname, String opts)
  
  Deprecated, for removal: This API element is subject to removal in a future version.
  
  Description copied from class: MolConverter.Builder
  
  Adds an input file.
  
  Overrides:
  
  addInput in class MolConverter.Builder
  
  Parameters:
  
  fname - the file's path
  
  opts - import options or null
- build
  
  @Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) public MolConverter build() throws IOException, IllegalArgumentException
  
  Deprecated, for removal: This API element is subject to removal in a future version.
  
  Description copied from class: MolConverter.Builder
  
  Builds the MolConverter.
  
  Overrides:
  
  build in class MolConverter.Builder
  
  Returns:
  
  the new MolConverter
  
  Throws:
  
  MolFormatException - If the molecule file is in a format that cannot be read
  
  MolExportException - If the molecule cannot be exported in the specified format
  
  IOException - If I/O error occurred when determining the file format.
  
  IllegalArgumentException - Invalid format string (fmt).
- clean
  
  @Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) public MolConverter.Builder clean(int dim, String opts)
  
  Deprecated, for removal: This API element is subject to removal in a future version.
  
  Description copied from class: MolConverter.Builder
  
  Enables cleaning.
  
  Overrides:
  
  clean in class MolConverter.Builder
  
  Parameters:
  
  dim - cleaning dimension, 2 or 3
  
  opts - cleaning options
  
  Returns:
  
  this builder object
- clean
  
  @Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) public MolConverter.Builder clean(int dim)
  
  Deprecated, for removal: This API element is subject to removal in a future version.
  
  Description copied from class: MolConverter.Builder
  
  Enables cleaning.
  
  Overrides:
  
  clean in class MolConverter.Builder
  
  Parameters:
  
  dim - cleaning dimension, 2 or 3
  
  Returns:
  
  this builder object
- clear
  
  @Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) public void clear()
  
  Deprecated, for removal: This API element is subject to removal in a future version.
  
  Description copied from class: MolConverter.Builder
  
  Clears all settings.
  
  Overrides:
  
  clear in class MolConverter.Builder
- clone
  
  @Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) protected Object clone()
  
  Deprecated, for removal: This API element is subject to removal in a future version.
  
  Description copied from class: MolConverter.Builder
  
  Clones the object.
  
  Overrides:
  
  clone in class MolConverter.Builder
- getInputCount
  
  @Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) public int getInputCount()
  
  Deprecated, for removal: This API element is subject to removal in a future version.
  
  Description copied from class: MolConverter.Builder
  
  Gets the number of input files/streams.
  
  Overrides:
  
  getInputCount in class MolConverter.Builder
  
  Returns:
  
  the number of input files/streams
- setEncodings
  
  @Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) public void setEncodings(String enc)
  
  Deprecated, for removal: This API element is subject to removal in a future version.
  
  Description copied from class: MolConverter.Builder
  
  Sets the input and/or output encoding.
  
  Overrides:
  
  setEncodings in class MolConverter.Builder
  
  Parameters:
  
  enc - the input and/or output encodings in INCHARSET..OUTCHARSET format
- setFields
  
  @Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) public void setFields(String[] fields)
  
  Deprecated, for removal: This API element is subject to removal in a future version.
  
  Description copied from class: MolConverter.Builder
  
  Sets the included fields to be shown in a table.
  
  Overrides:
  
  setFields in class MolConverter.Builder
  
  Parameters:
  
  fields - the fields
- setOutput
  
  @Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) public void setOutput(File f, String fmtopts)
  
  Deprecated, for removal: This API element is subject to removal in a future version.
  
  Description copied from class: MolConverter.Builder
  
  Sets the output file.
  
  Overrides:
  
  setOutput in class MolConverter.Builder
  
  Parameters:
  
  f - the output file
  
  fmtopts - file format and options (or null)
- setOutput
  
  @Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) public void setOutput(OutputStream out, String fmtopts)
  
  Deprecated, for removal: This API element is subject to removal in a future version.
  
  Description copied from class: MolConverter.Builder
  
  Sets the output stream.
  
  Overrides:
  
  setOutput in class MolConverter.Builder
  
  Parameters:
  
  out - the output stream
  
  fmtopts - file format and options (or null)
- setOutput
  
  @Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) public void setOutput(String fname, String fmtopts)
  
  Deprecated, for removal: This API element is subject to removal in a future version.
  
  Description copied from class: MolConverter.Builder
  
  Sets the output file.
  
  Overrides:
  
  setOutput in class MolConverter.Builder
  
  Parameters:
  
  fname - the output file's path
  
  fmtopts - file format and options (or null)
- setOutputFlags
  
  @Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) public void setOutputFlags(int outflags)
  
  Deprecated, for removal: This API element is subject to removal in a future version.
  
  Description copied from class: MolConverter.Builder
  
  Sets output flags.
  
  Overrides:
  
  setOutputFlags in class MolConverter.Builder
  
  Parameters:
  
  outflags - output flags, a combination of MolExporter.TEXT and MolExporter.MULTIPLE

Class MolConverter.Options

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Details

Options

Method Details

addInput

addInput

addInput

build

clean

clean

clear

clone

getInputCount

setEncodings

setFields

setOutput

setOutput

setOutput

setOutputFlags