Package chemaxon.marvin.beans

Class MarvinPane

java.lang.Object
java.awt.Component
java.awt.Container
javax.swing.JComponent
javax.swing.JRootPane
chemaxon.marvin.beans.MarvinPane
All Implemented Interfaces:
ComponentListener, ImageObserver, MenuContainer, PropertyChangeListener, Serializable, EventListener, Accessible
Direct Known Subclasses:
MSketchPane, MViewPane
@PublicApi public abstract class MarvinPane extends JRootPane implements PropertyChangeListener, ComponentListener
Ancestor of the Marvin Beans.
See Also:

  • Field Details

    • VERSION

      public static final String VERSION
      Marvin version.

    • molPanel

      protected chemaxon.marvin.common.swing.MolPanel molPanel
      Underlying panel.

    • params

      protected String params
      Parameter string.

    • topLevelContainer

      protected static Container topLevelContainer
      The top level container of the pane

  • Constructor Details

    • MarvinPane

      protected MarvinPane()
      Constructor.

  • Method Details

    • addMenuBarChangeListener

      public void addMenuBarChangeListener(chemaxon.marvin.common.swing.MenuBarChangeListener l)
      Adds a menubar change listener.
      Parameters:
      l - the menubar change listener
      Since:
      Marvin 4.1, 11/14/2005

    • addActionListener

      public void addActionListener(ActionListener l)
      Adds an action listener.
      Parameters:
      l - the action listener
      Since:
      Marvin 3.3

    • removeActionListener

      public void removeActionListener(ActionListener l)
      Removes an action listener.
      Parameters:
      l - the action listener
      Since:
      Marvin 3.3

    • init

      protected void init(chemaxon.marvin.common.swing.MolPanel m)
      Initializes the content pane.
      Parameters:
      m - the MolPanel

    • init

      protected void init(chemaxon.marvin.common.swing.MolPanel m, boolean start)
      Initializes the content pane.
      Parameters:
      m - the MolPanel
      start - enable (true) or disable (false) molecule/template structure/abbreviated group loading
      Since:
      Marvin 3.4.2, 08/03/2004

    • getMolPanel

      public chemaxon.marvin.common.swing.MolPanel getMolPanel()
      Returns the underlying panel. For internal use only.
      Returns:
      the underlying panel
      Throws:
      LicenseException - if there is not any license set for using Marvin Beans in the given context. From Marvin 6.2
      Since:
      Marvin 5.0

    • propertyChange

      public void propertyChange(PropertyChangeEvent ev)
      Handles "ancestor" events or sets parameters if a bean property is changed.
      Specified by:
      propertyChange in interface PropertyChangeListener
      Parameters:
      ev - the event object

    • componentResized

      public void componentResized(ComponentEvent ev)
      Specified by:
      componentResized in interface ComponentListener

    • componentMoved

      public void componentMoved(ComponentEvent ev)
      Does nothing.
      Specified by:
      componentMoved in interface ComponentListener
      Parameters:
      ev - the event object

    • componentShown

      public void componentShown(ComponentEvent ev)
      Shows windows if the parent frame is hidden.
      Specified by:
      componentShown in interface ComponentListener
      Parameters:
      ev - the event object

    • componentHidden

      public void componentHidden(ComponentEvent ev)
      Hides windows if the parent frame is hidden.
      Specified by:
      componentHidden in interface ComponentListener
      Parameters:
      ev - the event object

    • getPopupMenusEnabled

      public boolean getPopupMenusEnabled()
      Are popup menus enabled?
      Returns:
      true if the popup menus are enabled, else false
      Since:
      Marvin 2.9.12

    • arePopupMenusEnabled

      public boolean arePopupMenusEnabled()
      Are popup menus enabled?
      Returns:
      true if the popup menus are enabled, else false
      Since:
      Marvin 3.3

    • setPopupMenusEnabled

      public void setPopupMenusEnabled(boolean b)
      Allows popup menus. If you would like to use your own popup menu add MouseListener to the canvas of MarvinSketch or MarvinView and set builtin popup menus disabled.
      Example: 
       //Create custom popup menu
 ...
 sketchPane.getCanvasComponent().addMouseListener(actionListener);
 sketchPane.setPopupMenusEnabled(false); //avoid to display both popup menus
      Parameters:
      b - True sets popup menus enabled, false sets them disabled.
      Since:
      Marvin 2.9.12
      See Also:

    • getParams

      public String getParams()
      Gets the parameter string.
      Returns:
      the parameter string

    • setParams

      public void setParams(String s)
      Sets the parameter string. Must be called before any other property setting method.
      Example: MarvinView Table View Example
      See also: MViewParams
      Code example: 
       molPanel.setParams("rows=2\n" + "cols=2\n" + "layout0=:2:2:M:1:0:1:1:c:b:1:1:L:0:0:1:1:c:n:0:1\n"
     + "param0=:M:100:100:L:10b\n" + "\n"
     + "# MarvinSketch properties also have to be specified here for the\n"
     + "# sketcher windows that can be launched using Edit/Structure.\n"
     + "extrabonds=arom,wedge\n");
      Parameters:
      s - the parameter string

    • getParameter

      public String getParameter(String key)
      Gets a parameter. The return value is based on the contents of the parameter string, the bean properties file (MSketchPane.properties or MViewPane.properties) and the user's MarvinSketch configuration file (in case of MSketchPane).
      Parameters:
      key - the parameter name
      Returns:
      the value

    • getMolbg

      public Color getMolbg()
      Gets the molecule background color.
      Returns:
      the color

    • setMolbg

      public void setMolbg(Color c)
      Sets the molecule background color.
      Parameters:
      c - the color

    • getAtomsize

      public double getAtomsize()
      Gets the atom size.
      Returns:
      the atom size in C-C bond length units

    • setAtomsize

      public void setAtomsize(double r)
      Sets the atom size.

      size = atomsize*1.54 Å = atomsize*scale points

      Parameters:
      r - the atom size in C-C bond length units

    • getBoldBondWidth

      public double getBoldBondWidth()
      Gets the C-C bold bond width in pt units.
      Returns:
      the bold bond width of C-C bonds.

    • setBoldBondWidth

      public void setBoldBondWidth(double w)
      Sets the bold bond width.
      Parameters:
      w - the bold bond width of C-C bonds in pt units.

    • getBondLength

      public double getBondLength()
      Gets the C-C bond length in pt units.
      Returns:
      the bond Length of C-C bonds.

    • setBondLength

      public void setBondLength(double l)
      Sets the bond length.
      Parameters:
      l - the bond length of C-C bonds in pt units.

    • getBondSpacing

      public double getBondSpacing()
      Gets the bond spacing.
      Returns:
      the bond spacing in C-C bond length units.
      Since:
      Marvin 4.1, 10/19/2005

    • setBondSpacing

      public void setBondSpacing(double w)
      Sets the bond spacing.

      width = w*1.54 Å = w*scale pixels

      Parameters:
      w - the bond spacing in C-C bond length units.
      Since:
      Marvin 4.1, 10/19/2005

    • getCleanDim

      public int getCleanDim()
      Gets the number of space dimensions for cleaning.
      Returns:
      2 or 3
      Since:
      Marvin 3.1.3

    • setCleanDim

      public void setCleanDim(int d)
      Sets the space dimensions for cleaning.
      Parameters:
      d - 2 or 3
      Since:
      Marvin 3.1.3

    • getDispopts

      public int getDispopts()
      Gets display options.
      Returns:
      the display options

    • setDispopts

      public void setDispopts(int f)
      Sets display options.
      Parameters:
      f - the display options

    • getColorScheme

      public String getColorScheme()
      Gets the color scheme.
      Returns:
      MONO_SCHEME_S, CPK_SCHEME_S, SHAPELY_SCHEME_S or GROUP_SCHEME_S.
      See Also:
      • COLOR_SCHEMES

    • setColorScheme

      public void setColorScheme(String s)
      Sets the color scheme.
      Parameters:
      s - MONO_SCHEME_S, CPK_SCHEME_S, SHAPELY_SCHEME_S or GROUP_SCHEME_S.
      See Also:
      • DispOptConsts.COLOR_SCHEMES

    • isSetColoringEnabled

      public boolean isSetColoringEnabled()
      Is the atom/bond set coloring enabled?
      Returns:
      true if enabled, false if disabled
      Since:
      Marvin 3.3

    • setSetColoringEnabled

      public void setSetColoringEnabled(boolean v)
      Enable or disable atom/bond set coloring.
      Parameters:
      v - true to enable, false to disable
      Since:
      Marvin 3.3

    • getRendering

      public String getRendering()
      Gets the rendering style.
      Returns:
      the string representation of an enum value of type RenderingStyle.

    • setRendering

      public void setRendering(String s)
      Sets the rendering style.
      Parameters:
      s - the string representation of an enum value of type RenderingStyle.

    • getWireThickness

      public double getWireThickness()
      Gets the line thickness for wireframe mode.
      Returns:
      wire thickness in Angstroms
      Since:
      Marvin 3.4, 06/08/2004

    • setWireThickness

      public void setWireThickness(double d)
      Sets the line thickness for wireframe mode.
      Parameters:
      d - wire thickness in Angstroms
      Since:
      Marvin 3.4, 06/08/2004

    • getStickThickness

      public double getStickThickness()
      Gets the stick thickness.
      Returns:
      stick thickness in Angstroms

    • setStickThickness

      public void setStickThickness(double d)
      Sets the stick thickness.
      Parameters:
      d - stick thickness in Angstroms

    • getBallRadius

      public double getBallRadius()
      Gets the ball radius in units of covalent radius.
      Returns:
      the ball radius

    • setBallRadius

      public void setBallRadius(double r)
      Sets the ball radius in units of covalent radius.
      Parameters:
      r - the ball radius

    • getDownWedge

      public String getDownWedge()
      Gets the wedge bond display convention.
      Returns:
      "mdl" or "daylight"

    • setDownWedge

      public void setDownWedge(String s)
      Sets the wedge bond display convention. Down wedge points downward in MDL's convention ("mdl"), upward (at the chiral center) in Daylight's ("daylight").
      Parameters:
      s - "mdl" or "daylight"

    • isAtomNumbersVisible

      @Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) public boolean isAtomNumbersVisible()
      Deprecated, for removal: This API element is subject to removal in a future version.
      in 6.2.0. Use getAtomNumberingType() instead.
      Determines the visibility of the atom numbers.
      Returns:
      true if atom numbers are visible.
      Since:
      Marvin 2.9.13

    • getAtomNumberingType

      public int getAtomNumberingType()
      Determines the atom numbering.
      Returns:
      0: off, 1: Atom numbers, 2: IUPAC numbering.
      Since:
      Marvin 6.2.0

    • setAtomNumbersVisible

      @Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) public void setAtomNumbersVisible(boolean v)
      Deprecated, for removal: This API element is subject to removal in a future version.
      in 6.2.0. Use setAtomNumberingType() instead
      Shows or hides the atom numbers.
      Parameters:
      v - shows the atom numbers if true, else hide them.

    • setAtomNumberingType

      public void setAtomNumberingType(int type)
      Sets the atom numbering.
      Parameters:
      type - 0: off 1: Atom numbers 2: IUPAC numbering.
      Since:
      Marvin 6.2.0

    • isAtomMappingVisible

      public boolean isAtomMappingVisible()
      Determines the visibility of the atom mapping.
      Returns:
      true if the atom mapping is visible.
      Since:
      Marvin 2.10.5

    • setAtomMappingVisible

      public void setAtomMappingVisible(boolean v)
      Shows or hides the atom mapping.
      Parameters:
      v - shows the atom mapping if true, else hide it.

    • isAtomSymbolsVisible

      public boolean isAtomSymbolsVisible()
      Tests the visibility of the atom symbols in 3D.
      Returns:
      true if the atom symbols are visible.
      Since:
      Marvin 3.0
      See Also:
      • DispOptConsts.ATSYM_FLAG

    • setAtomSymbolsVisible

      public void setAtomSymbolsVisible(boolean v)
      Shows or hides the atom symbols in 3D.
      Parameters:
      v - shows the atom symbols if true, else hide them
      Since:
      Marvin 3.0
      See Also:
      • DispOptConsts.ATSYM_FLAG

    • getLonePairsVisible

      public boolean getLonePairsVisible()
      Tests whether lone pairs are visible.
      Returns:
      true if lone pairs are visible, false otherwise
      Since:
      Marvin 4.0

    • setLonePairsVisible

      public void setLonePairsVisible(boolean v)
      Shows or hides (implicit) lone pairs.
      Parameters:
      v - true show, false hides lone pairs
      Since:
      Marvin 4.0

    • setMarginSize

      public void setMarginSize(double size)
      Sets the documents margin size.
      Parameters:
      size - the size of the margin
      Since:
      Marvin 15.2.23, 2/16/2015

    • getMarginSize

      public double getMarginSize()
      Gets the documents margin size.
      Returns:
      the margin size
      Since:
      Marvin 15.2.23, 2/16/2015

    • isGrinvVisible

      public boolean isGrinvVisible()
      Gets the visibility of the graph invariants.
      Returns:
      true if graph invariants are visible.
      Since:
      Marvin 3.5, 11/01/2004

    • setGrinvVisible

      public void setGrinvVisible(boolean v)
      Shows or hides the graph invariants.
      Parameters:
      v - true to show the graph invariants, false to hide them.
      Since:
      Marvin 3.5, 11/01/2004

    • getImplicitH

      public String getImplicitH()
      Query the display method of implicit hydrogens.
      Returns:
      IMPLICITH_OFF_S, IMPLICITH_HETERO_S, IMPLICITH_HETEROTERM_S or IMPLICITH_ALL_S.
      See Also:
      • DispOptConsts.IMPLICITH_LEVELS

    • setImplicitH

      public void setImplicitH(String s)
      Sets the display method of implicit hydrogens.
      Parameters:
      s - IMPLICITH_OFF_S, IMPLICITH_HETERO_S, IMPLICITH_HETEROTERM_S or IMPLICITH_ALL_S.
      See Also:
      • DispOptConsts.IMPLICITH_LEVELS

    • getChiralitySupport

      public int getChiralitySupport()
      Gets chirality support level.
      Returns:
      the chirality support level.

    • setChiralitySupport

      public void setChiralitySupport(int l)
      Sets chirality support to show or hide the R/S labels.
      Parameters:
      l - chirality support level.

    • isEzVisible

      public boolean isEzVisible()
      Gets the E/Z display option.
      Returns:
      show (true) or hide (false)

    • setEzVisible

      public void setEzVisible(boolean v)
      Sets the E/Z display option.
      Parameters:
      v - show (true) or hide (false) E/Z

    • isMPVisible

      public boolean isMPVisible()
      Gets the M/P display option.
      Returns:
      show (true) or hide (false)

    • setMPVisible

      public void setMPVisible(boolean v)
      Sets the M/P display option.
      Parameters:
      v - show (true) or hide (false) M/p

    • isBondLengthVisible

      public boolean isBondLengthVisible()
      Gets the bond length display option.
      Returns:
      show (true) or hide (false)
      Since:
      Marvin 3.5, 23/08/2004

    • setBondLengthVisible

      public void setBondLengthVisible(boolean v)
      Sets the bond length display option.
      Parameters:
      v - show (true) or hide (false)
      Since:
      Marvin 3.5, 23/08/2004
      See Also:
      • DispOptConsts.BONDLEN_FLAG

    • getInvisibleSets

      public long getInvisibleSets()
      Gets the visibility of the specified atom sets.
      Returns:
      the invisibility mask

    • setInvisibleSets

      public void setInvisibleSets(long v)
      Sets the visibility of the specified atom sets. Set n is invisible if the n-th bit of the specified 64 bit number is 1.
      Parameters:
      v - invisibility mask
      See Also:

    • getAtomSetColor

      public Color getAtomSetColor(int i)
      Gets the color of an atom set.
      Parameters:
      i - atom set sequence number (0, ..., SETSEQ_MAX)
      Returns:
      the color
      Since:
      Marvin 3.3

    • setAtomSetColor

      public void setAtomSetColor(int i, Color color)
      Sets the color of an atom set.
      Parameters:
      i - atom set sequence number (0, ..., SETSEQ_MAX)
      color - the color
      Since:
      Marvin 3.3

    • setBondSetColor

      public void setBondSetColor(int i, Color color)
      Sets the color of a bond set.
      Parameters:
      i - bond set sequence number (1, ..., SETSEQ_MAX)
      color - the color
      Since:
      Marvin 3.3

    • getFormat

      public String getFormat()
      Gets the default molecule file format.
      Returns:
      the format or "DEFAULT" if it is not specified

    • setFormat

      public void setFormat(String fmt)
      Sets the default molecule file format. This setting also determine the format of molecule source in the Edit Source window.
      Parameters:
      fmt - the format string or null

    • getFile

      public File getFile()
      Gets the current molecule file.
      Returns:
      the file

    • setFile

      public void setFile(File f)
      Sets the current molecule file but does not load it.
      Parameters:
      f - the file

    • showFileDialog

      public void showFileDialog(String what, Molecule mol)
      Shows an Open or Save file dialog.
      Parameters:
      what - "open", "save" or "saveAs"
      mol - the molecule to save or null

    • getDebug

      public int getDebug()
      Gets the debugging level.
      Returns:
      the debugging level

    • setDebug

      public void setDebug(int debug)
      Switches on the debug messages.
      Parameters:
      debug - debug level

    • closeWindows

      public void closeWindows()
      Closes all windows opened by this MarvinPane.

    • isExitCanceled

      public boolean isExitCanceled()
      Check whether exiting is allowed or not.
      Returns:
      true if the use cancels the exit operation, false otherwise
      Since:
      Marvin 3.1.4

    • exit

      public void exit()
      Closes all windows opened by this MarvinPane and saves user initialization file.

    • getUserSettings

      public UserSettings getUserSettings()
      Gets the user settings object.
      Returns:
      the user settings object
      Since:
      Marvin 3.0

    • setUserSettings

      public void setUserSettings(UserSettings settings)
      Sets the user settings object.
      Parameters:
      settings - the user settings object
      Since:
      Marvin 3.0

    • isSaveIniEnabled

      public boolean isSaveIniEnabled()
      Automatically saves user settings to an initialization file.
      Returns:
      true if enabled, false if disabled
      Since:
      Marvin 2.8.3

    • setSaveIniEnabled

      public void setSaveIniEnabled(boolean v)
      Enables or disables automatic preference saving.
      Parameters:
      v - true to enable, false to disable
      Since:
      Marvin 2.8.3

    • getDirectory

      public File getDirectory()
      Sets the working directory.
      Returns:
      the working directory
      Since:
      Marvin 3.0

    • setDirectory

      public void setDirectory(File wd)
      Sets the working directory, if the Load/Save is in Last Opened Mode.
      Parameters:
      wd - the working directory
      Since:
      Marvin 3.0

    • isExperimentalEnabled

      public boolean isExperimentalEnabled()
      Tests whether experimental features are enabled.
      Returns:
      true if experimental features are enabled, false otherwise
      Since:
      Marvin 3.5, 11/04/2004

    • setExperimentalEnabled

      public void setExperimentalEnabled(boolean v)
      Enable or disable experimental features.
      Parameters:
      v - true enables, false disables experimental features
      Since:
      Marvin 3.5, 11/04/2004

    • showFileOpenDialog

      public void showFileOpenDialog()
      Shows file open dialog.
      Since:
      Marvin 3.0

    • getCommonActions

      @Deprecated public chemaxon.marvin.common.swing.action.CommonActions getCommonActions()
      Deprecated.
      Gets the common actions. For internal use only.
      Returns:
      the actions
      Since:
      Marvin 5.0, 11/17/2006

    • addToolsMenu

      @Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) public JMenu addToolsMenu(Container m)
      Deprecated, for removal: This API element is subject to removal in a future version.
      Not used.
      Adds the Tools menu.
      Parameters:
      m - the parent menu or menu bar
      Returns:
      the created menu
      Since:
      Marvin 3.4, 05/03/2004

    • addHelpMenu

      public JMenu addHelpMenu(Container m)
      Adds the help menu to a parent menu.
      Parameters:
      m - the parent menu or menu bar
      Returns:
      the created menu
      Since:
      Marvin 3.4, 05/03/2004

    • getResourceBundle

      public static ResourceBundle getResourceBundle(String name)
      Utility method to get a resource bundle. If the "LOCALES" resource is set and the current locale is listed, then also loads resources for to the corrent locale.
      Parameters:
      name - resource file path
      Returns:
      the resource bundle
      Since:
      Marvin 3.3

    • beginHourglass

      public void beginHourglass()
      Changes the cursor to hourglass at the beginning of a long operation.
      Since:
      Marvin 3.5, 10/31/2004

    • endHourglass

      public void endHourglass()
      Changes the hourglass cursor back to normal at the end of a long operation.
      Since:
      Marvin 3.5, 10/31/2004

    • showErrorDialog

      public void showErrorDialog(String msg, Throwable ex)
      Show error dialog.
      Parameters:
      msg - error message
      ex - the exception
      Since:
      Marvin 3.5, 10/26/2004

    • readResources

      protected static void readResources(Class<?> cl, String fname)
      Reads resources from the specified file.
      Parameters:
      cl - the class to read resources for
      fname - resource filename
      Since:
      Marvin 3.0

    • writeExternal

      public void writeExternal(ObjectOutput out) throws IOException
      Saves object state. For internal use only! This method does not implement the Externalizable interface. It is called by the writeExternal method of the MSketch and MView classes, which do implement it.
      Parameters:
      out - the stream to write the object to
      Throws:
      IOException - Includes any I/O exceptions that may occur
      Since:
      Marvin 3.5, 2004/11/01

    • readExternal

      public void readExternal(ObjectInput in) throws IOException
      Restores object state. For internal use only! This method does not implement the Externalizable interface. It is called by the readExternal method of the MSketch and MView classes, which do implement it.
      Parameters:
      in - the stream to read data from in order to restore the object
      Throws:
      IOException - if I/O errors occur
      ClassNotFoundException - If the class for an object being restored cannot be found.
      Since:
      Marvin 3.5, 2004/11/01

    • writeMol

      protected static void writeMol(ObjectOutput out, Molecule mol) throws IOException
      Throws:
      IOException

    • readMol

      protected static Molecule readMol(ObjectInput in) throws IOException
      Throws:
      IOException

    • readDoc

      protected static MDocument readDoc(ObjectInput in) throws IOException
      Throws:
      IOException

    • getBondWidth

      @Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) public double getBondWidth()
      Deprecated, for removal: This API element is subject to removal in a future version.
      as of Marvin 4.1, replaced by getBondSpacing()
      Gets bond spacing.
      Returns:
      the bond spacing in bond length units

    • setBondWidth

      @Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) public void setBondWidth(double w)
      Deprecated, for removal: This API element is subject to removal in a future version.
      as of Marvin 4.1, replaced by setBondSpacing(double)
      Sets bond spacing.
      Parameters:
      w - bond spacing in bond length units

    • getSetColor

      @Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) public Color getSetColor(int i)
      Deprecated, for removal: This API element is subject to removal in a future version.
      as of Marvin 3.3, replaced by getAtomSetColor
      Parameters:
      i - atom set sequence number (0, ..., SETSEQ_MAX)
      Returns:
      the color

    • setSetColor

      @Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) public void setSetColor(int i, Color color)
      Deprecated, for removal: This API element is subject to removal in a future version.
      as of Marvin 3.3, replaced by setAtomSetColor
      Parameters:
      i - atom set sequence number (0, ..., SETSEQ_MAX)
      color - the color

    • getLabels

      @Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) public boolean getLabels()
      Deprecated, for removal: This API element is subject to removal in a future version.
      use isAtomSymbolsVisible() instead

    • setLabels

      @Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) public void setLabels(boolean v)
      Deprecated, for removal: This API element is subject to removal in a future version.
      use setAtomSymbolsVisible(v) instead

    • isGrinv

      @Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) public boolean isGrinv()
      Deprecated, for removal: This API element is subject to removal in a future version.
      as of Marvin 3.5, use isGrinvVisible() instead
      Returns:
      true if graph invariants are visible.
      Since:
      Marvin 2.10.3

    • setGrinv

      @Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) public void setGrinv(boolean v)
      Deprecated, for removal: This API element is subject to removal in a future version.
      as of Marvin 3.5, use setGrinvVisible(boolean) instead
      Parameters:
      v - true to show the graph invariants, false to hide them.
      Since:
      Marvin 2.10.3

    • createMenu

      @Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) public static JMenu createMenu(ResourceBundle rc, String key)
      Deprecated, for removal: This API element is subject to removal in a future version.
      as of Marvin 3.3.1, replaced by SwingUtil.createMenu
      Parameters:
      rc - the resources
      key - name of the label resource
      Returns:
      the menu
      Since:
      Marvin 3.3

    • initButton

      @Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) public static void initButton(AbstractButton b, ResourceBundle rc, String key)
      Deprecated, for removal: This API element is subject to removal in a future version.
      as of Marvin 3.3.1, replaced by SwingUtil.initButton
      Parameters:
      b - the button
      rc - the resources
      key - name of the resource
      Since:
      Marvin 3.3

    • initAction

      @Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) public static void initAction(Action action, ResourceBundle rc, String key, KeyStroke accel)
      Deprecated, for removal: This API element is subject to removal in a future version.
      as of Marvin 3.3.1, replaced by SwingUtil.initAction
      Parameters:
      action - the action
      rc - the resources
      key - name of the resource
      accel - the accelerator or null
      Since:
      Marvin 3.3

    • setTopLevelContainer

      public void setTopLevelContainer(Container tlc)
      Sets the top level container (JFrame, JDialog, etc) of the pane. If the container (window) size is to be restored from the .mrv file this also have to be set when adding the MarvinPane instance to the content pane of the container.
      Parameters:
      tlc - the top level container

    • getTopLevelContainer

      public Container getTopLevelContainer()
      Returns:
      the top level container (if set) or null

    • getReadGlobalGUIProperties

      @Deprecated(forRemoval=true) @SubjectToRemoval(date=JUL_01_2025) public boolean getReadGlobalGUIProperties()
      Deprecated, for removal: This API element is subject to removal in a future version.
      since Marvin 5.1 when this and the getSaveGlobalGUIProperties() function have been merged.
      Checks whether we have to read GUI properties from a .MRV file
      Returns:
      true if we have a molPanel and according to its settings want to save properties
      Since:
      Marvin 5.0

    • getSaveGlobalGUIProperties

      public boolean getSaveGlobalGUIProperties()
      Checks whether we have to read GUI properties from a .MRV file
      Returns:
      true if we have a molPanel and according to its settings want to save properties
      Since:
      Marvin 5.1

    • setGlobalGUIProperties

      public void setGlobalGUIProperties(MPropertyContainer gp)

    • setEnabled

      public void setEnabled(boolean b)
      Enables or disables this component, depending on the value of the parameter b. An enabled component can respond to user input and generate events. Components are enabled initially by default.
      Note: Overwrites JComponent.setEnabled(boolean).
      Overrides:
      setEnabled in class JComponent
      Parameters:
      b - If true, this component is enabled; otherwise this component is disabled.
      Since:
      Marvin 4.1.6

    • doPaste

      public abstract void doPaste()
      Invokes Paste actions.
      Since:
      Marvin 5.0

    • setRgroupsVisible

      public void setRgroupsVisible(boolean b)
      Shows or hides R-group definitions.
      Parameters:
      b - true to show, false to hide R-group definitions.
      Since:
      Marvin 5.0.4 05/21/2008

    • isRgroupsVisible

      public boolean isRgroupsVisible()
      Determines the visibility of R-group defintions.
      Returns:
      True if visible, else false.
      Since:
      Marvin 5.0.4 05/21/2008

    • isPrintEnabled

      public boolean isPrintEnabled()
      Determines if the File->Print menu item is enabled or not.
      Returns:
      True, if Print is enabled in the menu, else false.
      Since:
      5.4 09/06/2010
      See Also:

    • setPrintEnabled

      public void setPrintEnabled(boolean b)
      Set the accessibility of the Print menu item in the File menu.
      Parameters:
      b - True to enable print operation from the file menu. False to set it to disabled.
      Since:
      5.4 09/06/2010
      See Also:

    • setSgroupDataFormatted

      public void setSgroupDataFormatted(boolean isFormatted)
      Sets if the Sgroup data to be formatted. The default value is true

    • isSgroupDataFormatted

      public boolean isSgroupDataFormatted()
      Returns whether the Sgroup data is formatted.