All Classes
AbbrevGroupRecognizer
AbbreviatedGroupChecker
AbsentChiralFlagChecker
AbsentChiralFlagFixer
AbsoluteStereoAction
AbsoluteStereoAction.Type
AbsoluteStereoConfigurationChecker
AbsoluteStereoFixer
AbstractMRecordReader
AbstractShapeComparator
AbstractShapeGenerator
AbstractShapeGeneratorParameter
AbstractStandardizerAction
AbstractStereoFilter
AbstractStructureChecker
AbstractStructureFixer
ActionStringBasedConfigurationReader
AddChiralFlagFixer
AddExplicitHydrogensAction
AdvancedCheckerRunner
AliasChecker
AliasToAtomAction
AliasToGroupAction
Alignment
AlignmentAccuracyMode
AlignmentMolecule
AlignmentMoleculeFactory
AlignmentMoleculeFactory.ProgressBarInterface
AlignmentPlugin
AlignmentProperties
AlignmentProperties.ColoringScheme
AlignmentProperties.ColorNotSpecifiedCase
AlignmentProperties.DegreeOfFreedomType
AlignmentProperties.FlexibilityMode
AlignmentProperties.NodeType
AlignmentProperties.OrientationType
AlignOnPairedAtoms
AlignRigidEasy
AngleMonitor
AnyBondStyle
AromaticityCheckerResult
AromaticityErrorChecker
AromatizeAction
AromatizeAction.Type
Aromatizer
ArrayMDocSource
AsyncCallback
AtomChecker
AtomContext
AtomIdentifier
AtomMapChecker
AtomProperty
AtomProperty
AtomProperty.Radical
AtomQueryPropertyChecker
AtomQueryPropertyCheckerResult
AtomSelection
AtomTypeChecker
AtomTyping
AtomValueChecker
AtropFilter
AtropisomerChecker
AtropIsomerDetector
AtropIsomerDetector.Accuracy
AtropStereoCenter
AtropStereoDescriptor
AttachedData
AttachedDataChecker
AutoMapper
AutoMapper.Options
AxialFilter
AxialStereoCenter
AxialStereoDescriptor
BaseShapeComparatorParameter
BasicStandardizerRunner
BCUT
BCUTGenerator
BCUTParameters
BemisMurckoClustering
BinaryMetrics
BinaryVectorComparator
BinaryVectorComparator.Util
BinaryVectorDescriptor
BinaryVectorMetricFactory
BinaryVectorMetricFactory.ToLinenote
BinaryVectors
BinaryVectors.Endianness
BondAngleChecker
BondAngleCheckerResult
BondAngleFixer
BondChecker
BondInfo
BondLengthChecker
BondLengthCheckerResult
BondLengthFixer
BondTable
BoundingBox
BracketsChecker
BuilderClass
BuildupMcs
BvGenerator
BvParameters
BvParameters.Builder
BvParameters.ConstructBvGenerator
BvParameters.StringFormat
CalculatorPlugin
CalculatorPlugin.HydrogenData
CalculatorPluginDisplay
CalculatorPluginOutput
Cancelable
CancelObserver
CDParameters
CellOrComponentId
CFGenerator
Cfp
CFParameters
CfpComparator
CfpGenerator
CfpParameters
CfpParameters.Builder
CfpParameters.ConstructCfpGenerator
CfpTableReader
CfpTableReader.Factory
Changes
ChargePlugin
CheckerInfo
CheckerRunner
CheckerSeverity
ChemConst
ChemContext
ChemicalFingerprint
ChemJEP
ChiralFlagChecker
ChiralFlagErrorChecker
CIPStereoCalculator
CIPStereoDescriptorIface
CIPStereoDescriptorIface.CIPType
CIPStereoDescriptorIface.CIPValue
CIPStereoDescriptorIface.CIPValue.AtropStereoIUPACValue
CIPStereoDescriptorIface.CIPValue.AtropStereoValue
CIPStereoDescriptorIface.CIPValue.AxialStereoIUPACValue
CIPStereoDescriptorIface.CIPValue.AxialStereoValue
CIPStereoDescriptorIface.CIPValue.CisTransStereoIUPACValue
CIPStereoDescriptorIface.CIPValue.CisTransStereoValue
CIPStereoDescriptorIface.CIPValue.TetrahedralStereoIUPACValue
CIPStereoDescriptorIface.CIPValue.TetrahedralStereoValue
CIPStereoRecognizer
CircularRGroupReferenceChecker
CisDoubleBondFilter
CisTransDoubleBondFilter
CisTransStereoCenter
CisTransStereoDescriptor
Clean2DAction
Clean2DAction.Type
Clean3DAction
Cleaner
CleanFixer
CleanUtil
ClearIsotopesAction
ClearStereoAction
ClearWedgeFixer
ClipboardHandler
CloseableIterator
CloseableIterators
Cluster
CmdlineUtils
CodeAssistFactory
CodeAssistFactory.CodeAssistConfiguration
ColorGenerator
ComparisonResult
ComponentChecker
ComponentElement
CompositeInputProducer
CompositeWorkUnit
CompositeWorkUnitFactory
ConcurrentProcessor
ConcurrentProcessors
ConcurrentReactorProcessor
ConcurrentStandardizerProcessor
ConcurrentStandardizerProcessor.MolTransformer
ConfigurationReader
ConformerPlugin
ContractGroupFixer
ContractSgroupsAction
Control
ConvertAliasToGroupFixer
ConvertConstants
ConvertDoubleBondsAction
ConvertDoubleBondsAction.Type
ConvertPiMetalBondsAction
ConvertPseudoToGroupFixer
ConvertToAtomFixer
ConvertToCarbonFixer
ConvertToCrossedDoubleBondFixer
ConvertToElementalFormFixer
ConvertToEnhancedStereoAction
ConvertToEnhancedStereoAction.Type
ConvertToIonicFormFixer
ConvertToPlainDoubleBondFixer
ConvertToSingleBondFixer
ConvertToWigglyDoubleBondFixer
CoordinateBondOnMulticenterStyle
CoordinateBondStyle
CoordinationSystemErrorChecker
CopyOptConstants
CovalentCounterionChecker
CovalentCounterionFixer
CreateGroupAction
Creator
CreatorWrapper
CrossedDoubleBondChecker
CrossedDoubleBondFixer
CTransform3D
CubeRecognizer
CustomDescriptor
CustomMatcher
CustomMatcherFactory
DatabaseSearchException
DataSgroup
DearomatizeAction
DearomatizeFixer
DefaultExternalStructureCheckerResult
DefaultPluginWorkUnit
DefaultSolubilityCategory
DefaultStructureCheckerResult
Description
Descriptor
DescriptorComparator
DescriptorGenerator
DescriptorGenerator
DescriptorParameters
DescriptorSerializer
DihedralControl
DihedralMonitor
DihedralRotator
DihedralScanListener
DihedralScanResult
DihedralScanStep
DipoleCalculator
DipoleCalculator.Builder
DipoleResult
DipoleResult.Unit
DisconnectMetalAtomsAction
Discovery
DispOptConsts
DissimilarityInput
DistanceBasedMetalloceneFixer
DistanceMonitor
DocumentAnnotator
DocumentAnnotator.DocumentType
DocumentAnnotator.Listener
DocumentAnnotator.ProgressInfo
DocumentAnnotatorOptions
DocumentAnnotatorOptions.Builder
DocumentAnnotatorOptions.ImageFormat
DocumentExtractor
DocumentExtractor.ProgressInfo
DocumentExtractor.ProgressListener
DocumentStyleAPI
DocumentToStructure
DotfileUtil
DPoint3
DRShapeDescriptor
DRShapeMetrics
DynamicArgument
ECFP
Ecfp
EcfpAtomTypizers
EcfpComparator
ECFPFeature
ECFPFeatureLookup
ECFPGenerator
EcfpGenerator
ECFPParameters
EcfpParameters
EcfpParameters.Builder
EcfpParameters.ConstructEcfpGenerator
EcfpTableReader
EcfpTableReader.Factory
ElementalAnalyser
ElementalAnalyserPlugin
ElementalAnalysis
EmfExporter
EmfExporter.Builder
EmptyStructureChecker
EnhancedStereo
EnhancedStereoGroup
ErrorHandler
ErrorProcessor
ErrorReport
Evaluator
Expandable
ExpandAction
ExpandGroupFixer
ExpandSgroupsAction
ExplicitHydrogenChecker
ExplicitHydrogenFixer
ExplicitHydrogenResult
ExplicitLonePairChecker
ExternalStructureChecker
ExternalStructureCheckerResult
EZDoubleBondChecker
FastUpperBoundCalculator
FingerprintGenerator
FixerInfo
FixerPriorityComparator
Fixes
FixesExternal
FixMode
FlexibilityModeParameterBuilder
FlipWedgeBondFixer
FloatVectorComparator
FloatVectorComparator.Util
FloatVectorDescriptor
FloatVectorMetrics
FrameworkClusteringResults
FvGenerator
FvParameters
FvParameters.Builder
FvParameters.NumericRepresentation
FvParameters.SparseCompression
GeometryPlugin
GlobalLocationControl
GlobalOrientationControl
GraphicCell
GraphicComponent
GraphicScene
GroupDefinition
Guarded
Guarded.EnsureThat
Guarded.New
HAcc
HaltOnErrorOption
HasAttachedDataFilter
HashCode
HBDAPlugin
HBParameters
HDon
Heavy
HierarchicCluster
HierarchicClustering
HierarchicClustering.Alignment
HlbPlugin
HlbPlugin.Builder
HomologyTranslationOption
HTTPServiceDescriptor
HuckelAnalysisPlugin
HybridizationStateConsts
Hydrogenize
IDBasedAssigner
IDBasedAssignerBuilder
IDBasedClusterBuilder
IDBasedHierarchicCluster
IDBasedHierarchicClusterBuidler
IDBasedHierarchicClustering
IDBasedSingleLevelClustering
ImageExporter
ImageExporter.AtomNumberingType
ImageExporter.Builder
ImageExporter.CarbonDisplay
ImageExporter.ChiralityDisplayOption
ImageExporter.Coloring
ImageExporter.HydrogenDisplayOption
ImageExporter.LigandOrderVisibility
ImageExporter.LineType
ImageExporter.Rendering
ImageExportParamConstants
ImageExportParamConstants.anyBondValues
ImageExportParamConstants.carbonLabelVisibilityValues
ImageExportParamConstants.chiralValues
ImageExportParamConstants.coloringValues
ImageExportParamConstants.downwedgeValues
ImageExportParamConstants.implicitHValues
ImageExportParamConstants.renderingValues
ImageExportUtil
Incomplecule
IncorrectTetrahedralStereoChecker
InputProducer
InstanceWrapper
InvalidCASNumberException
InvalidChecker
InvalidECNumberException
InvalidStandardizerAction
IonChargePlugin
IsoelectricPointPlugin
IsotopeChecker
IsotopeFixer
IteratorFactory
IUPACNamingPlugin
JpegExporter
JpegExporter.Builder
JsonServiceDescriptor
JsonServiceDescriptor.Method
KnownAtropFilter
KnownAxialFilter
KnownDoubleBondFilter
KnownResolvedTetrahedralFilter
Label
LanceWilliamsAlgorithm
LanceWilliamsMerge
LanceWilliamsMerges
LanceWilliamsMerges.AverageLinkage
LanceWilliamsMerges.CompleteLinkage
LanceWilliamsMerges.SingleLinkage
LanceWilliamsMerges.Wards
LDParameters
LevelAssigner
LicenseDialog
LicenseManager
LocalLocationControl
LocalOrientationControl
LocalServiceDescriptor
LogD
logDPlugin
LogP
logPPlugin
Maccs
MaccsComparator
MaccsParameters
MaccsParameters.Builder
MaccsParameters.ConstructMaccsGenerator
MacroMoleculeComponent
MacroMoleculeComponent.MoleculeVisualizer
MajorMicrospeciesAccessorPlugin
MajorMicrospeciesPlugin
MapAction
MapMoleculeFixer
Mapper
Mapper.MappingStyle
MapReactionAction
MapReactionFixer
MarkushAromaticityHandlingOption
MarkushEnumerationPlugin
MarkushFeature
MarvinPane
MarvinPaneBeanInfo
MarvinTransferable
Mass
MatchingOptions
MatchingOptions.Builder
MAtomSetPoint
MaxCliqueMcs
MaxCommonSubstructure
MaxSearchFrequencyExceededException
MBooleanProp
MBracket
MChemicalStruct
MCollectionProp
MCSAlignment
MCSAlignment.Factory
MCSAlignmentResult
McsSearchOptions
McsSearchOptions.Builder
McsSearchResult
MDGenerator
MDGeneratorException
MdlCompressor
MDocSource
MDocStorage
MDocStorage.Listener
MDocument
MDocument.CheckerMark
MDoubleArrayProp
MDoubleProp
MDParameters
MDParametersException
MDReaderFactory
MDTableReader
MeasurementMonitor
MEFlow
MEFlowBasePoint
MEllipse
MemoizedSparseCollection
MemoizingIterator
MesomerizeAction
MetalloceneCheckerResult
MetalloceneErrorChecker
MetalloceneFixer
MetricFactory
MetricFactory.ToLinenote
MetricMetadata
Metrics
MetricsType
MFieldAccessor
MFileFormat
MFileFormatUtil
MFont
MHashProp
MHCoords3DProp
MinMaxDistance
MIntegerArrayProp
MIntegerProp
MissingAtomMapChecker
MissingRGroupChecker
MListProp
MMidPoint
MMidPoint.Sticky
MMoleculeProp
MMPAlignment
MMPAlignmentProperties
MMPAlignmentResult
MObject
MObjectProp
MolAligner
MolAtom
MolBond
MolComparator
MolCondition
MolContext
MolConverter
MolConverter.Builder
MolConverter.Options
MolecularDescriptor
MolecularDescriptorGenerator
MolecularDynamicsPlugin
MolecularFormulas
MolecularSurfaceComponent
Molecule
MoleculeChargeChecker
MoleculeComponent
MoleculeGraph
MoleculeGraph.ValenceCheckState
MoleculeImporter
MoleculeIo
MoleculeIterator
MoleculeIteratorFactory
MoleculeUtil
MolExport
MolExporter
MolExportException
MolExportModule
MolfileUtil
MolFilter
MolFormatException
MolFragLoader
MolFragLoader.RgroupAttachmentCountFilter
MolImport
MolImporter
MolImportModule
MolImportModule.PreferredView
MolInput
MolInputBuilder
MolInputProducer
MolInputStream
MolPrinter
MolRenderer
MolSearch
MolSearchOptions
Monitor
MPoint
MPolyline
MProgressMonitor
MProp
MPropertyContainer
MPropHandler
MRecord
MRecordImporter
MRecordParseException
MRecordReader
MRecordReader.Position
MRectangle
MRectanglePoint
MRectanglePoint.Sticky
MRoundedRectangle
MSAPlugin
MsbmpExporter
MsbmpExporter.Builder
MSelectionDocument
MSketch
MSketchPane
MSketchPaneBeanInfo
MSpaceEasy
MStringProp
MTextAttributes
MTextBox
MTextDocument
MTextDocument.Section
MTransferable
MTransformable
MultiCenterChecker
MulticenterSgroup
MultiComponentChecker
MultipleSgroup
MultipleStereocenterChecker
MView
MViewEditor
MViewPane
MViewPaneBeanInfo
MViewParams
MViewRenderer
NameConverter
NameConverters
NameFormatException
NameFormatException.FilteredCase
NamePrefixException
NeutralizeAction
NeutralizeChargeFixer
NMRCalculator
NMRCalculator.Builder
NMRExporter
NMRSpectrum
NMRSpectrum.Nucleus
NMRSpectrum.Unit
NonStandardWedgeSchemeChecker
NonStereoWedgeBondChecker
NoStructure
OCRErrorChecker
OptionDescriptor
OptionsPane
OrbitalElectronegativityPlugin
OrderedElement
OrderedElements
OrderedInputProcessingException
OverlappingAtomsChecker
OverlappingBondsChecker
PairwiseAlignment
PairwiseComparison
PairwiseSimilarity3D
Parameter
ParameterBuilder
ParameterConstants
ParameterPanel
ParameterPanelHandler
ParameterTab
ParameterWrapper
ParameterWrapper.ParameterType
Parametrized
PartialCleanFixer
PDBRecognizer
PdfExporter
PdfExporter.Builder
PeptideRecognizer
PeriodicSystem
Persistent
PfComparator
PFGenerator
PfGenerator
PFParameters
PfParameters
PfParameters.Builder
PfParameters.ConstructPfGenerator
PfTableReader
PfTableReader.Factory
Pharmacophore3D
PharmacophoreArrow
PharmacophoreFingerprint
PharmacophoreFP
PharmacophorePoint
pKaPlugin
PluginException
PluginExecutionException
PluginFactory
PluginWorkUnit
PMap
PMapper
PngExporter
PngExporter.BitPixelValues
PngExporter.Builder
PolarizabilityPlugin
PositionedInputStream
PositionMonitor
PostOrderDfsVisitor
ProgressObserver
ProgressObservers
PseudoAtomChecker
PSymbols
PublicAPI
QueryAtomChecker
QueryBond
QueryBondChecker
RacemateChecker
RacemicTetrahedralFilter
RadicalChecker
RareElementChecker
RatomChecker
ReactantSetEnumeration
ReactingCenterBondMarkChecker
ReactionChecker
ReactionCheckerResult
ReactionContext
ReactionEditUtils
ReactionException
ReactionFingerprint
ReactionMapErrorChecker
Reactor
RearomatizeFixer
RearrangeWedgesFixer
Recognizer
RecognizerList
RefractivityPlugin
RelativeStereoChecker
RemovalDate
RemoveAbsoluteStereoAction
RemoveAliasFixer
RemoveAtomFixer
RemoveAtomMapFixer
RemoveAtomQueryPropertyFixer
RemoveAtomValueFixer
RemoveAtomValuesAction
RemoveAttachedDataAction
RemoveAttachedDataFixer
RemoveBondFixer
RemoveBracketsFixer
RemoveChiralFlagFixer
RemoveExplicitHydrogenFixer
RemoveExplicitHydrogensAction
RemoveFragmentAction
RemoveFragmentAction.Measurement
RemoveFragmentAction.Method
RemoveInvalidChiralFlagFixer
RemoveRadicalFixer
RemoveReactingCenterBondMarkFixer
RemoveRGroupDefinitionsAction
RemoveSolventsAction
RemoveStereoCareBoxAction
RemoveStereoCareBoxFixer
RemoveStereoInversionRetentionMarkFixer
RemoveUnreferencedRgroupDefinitionsFixer
RemoveValencePropertyFixer
RemoveZCoordinateFixer
RenderingStyle
RepeatingUnitSgroup
ReplaceAtomsAction
ResizeControl
ResonancePlugin
ReusableInputProducer
ReusablePluginWorkUnit
RFGenerator
RFParameters
RgMolecule
RgroupAttachmentErrorChecker
RgroupAttachmentFixer
RgroupBridgeRatomChecker
RgroupCheckerResult
Ring
RingHandlingMode
RingStrainErrorChecker
RotatableBondDetector
RxnMolecule
ScalarDescriptor
SDParameters
Search
SearchConstants
SearchException
SearchHit
SearchMode
SearchOptions
SelectionMolecule
ServiceArgument
ServiceDescriptorEditor
ServiceDescriptorEditorProvider
ServiceDescriptorReader
ServiceDescriptorTools
ServiceDescriptorWriter
ServiceDialogProvider
ServiceException
ServiceHandler
ServiceUtil
SetAbsoluteStereoAction
SetHydrogenIsotopeSymbolAction
SetHydrogenIsotopeSymbolAction.Type
SetOfSmallestRingsOption
Sgroup
SgroupAtom
SgroupCheckerResult
SgroupType
ShapeComparator
ShapeComparatorException
ShapeComparisonResult
ShapeDescriptor
ShapeDescriptor
ShapeFunction
ShapeGenerator
ShapeGeneratorException
ShapeMetrics
ShapeParameters
SimilarityCalculator
SimilarityCalculatorFactory
SimilarityCalculatorFactory.Representation
SimpleDfsVisitor
SimpleErrorHandling
SimpleSearcher
SimpleSearcherFactory
SingleLevelClustering
SingleLinkage
Sink
SketchCheckerRunner
SketchParameterConstants
SmartsAtomQuerifier
SmilesMemoizingMoleculeIterator
SMILESRecognizer
Smolecule
SoapServiceDescriptor
SolubilityCalculator
SolubilityCategories
SolubilityCategories.UndefinedSolubilityCategory
SolubilityCategory
SolubilityResult
SolubilityUnit
SolventChecker
SphereExclusion
StandardizedMolSearch
Standardizer
StandardizerAction
StandardizerActionDescriptor
StandardizerActionFactory
StandardizerActionFactory.Builder
StandardizerActionFactory.StandardizerClassDescriptor
StandardizerActionInfo
StandardizerActionRunner
StandardizerActionStringReader
StandardizerConfiguration
StandardizerConfigurationReader
StandardizerResult
StandardizerRunner
StandardizerRunner.ErrorHandlingPolicy
StandardizerUtil
StandardizerWrapper
StandardizerWrappers
StandardizerXMLReader
StandardUpperBoundCalculator
StarAtomChecker
StereoActivePart
StereoAnalysis
StereoCareBoxChecker
StereoCenter
StereoCenterVisitor
StereoCheckUtility
Stereochemistry
StereoConstants
StereoConstants
StereoConstants.EnhancedStereoType
StereoConstants.StereoValue
StereoConstants.StereoValue.AtropStereo
StereoConstants.StereoValue.AxialStereo
StereoConstants.StereoValue.CisTransStereo
StereoConstants.StereoValue.TetrahedralStereo
StereoConstants.Type
StereoInversionRetentionMarkChecker
StereoisomerEnumeration
StereoisomerPlugin
StereoisomerSettings
StereoisomerSettings.StereoisomerType
StraightDoubleBondChecker
StripSaltsAction
StructuralFrameworksPlugin
StructuralFrameworksPlugin.FrameworkTypes
StructuralFrameworksPlugin.VerbosePrinter
StructureCheck
StructureChecker
StructureCheckerDescriptor
StructureCheckerErrorType
StructureCheckerFactory
StructureCheckerHelper
StructureCheckerResult
StructureCheckerUtility
StructureCheckOptions
StructureCheckOptions.Mode
StructureCheckOptions.ModeConverter
StructureCheckOptions.Type
StructureCheckOptions.TypeConverter
StructureFixer
StructureFixerDescriptor
StructureFixerFactory
SubjectToRemoval
SubProgressObserver
SubstructureChecker
SubstructureCheckerResult
SubstructureFixer
SuperatomSgroup
SurfaceColoring
SurfaceComponent
SvgExporter
SvgExporter.Builder
SwingUtil
TableOptions
TableSupport
TargetHomologyMatchingMode
TaskScheduler
TautomerizationPlugin
TautomerizeAction
TetrahedralFilter
TetrahedralStereoCenter
TetrahedralStereoDescriptor
ThreeDimensionChecker
TopologyAnalyser
TopologyAnalyserPlugin
TPSA
TPSAPlugin
TransDoubleBondFilter
TransferableDescriptor
TransformAction
Transformer
TransformerFactory
TverskyParameters
TverskyParameters.Builder
UnbalancedReactionChecker
UngroupFixer
UngroupSgroupsAction
UnitPathAssigner
UnknownAtropFilter
UnknownAxialFilter
UnknownResolvedTetrahedralFilter
UnmapAction
UnresolvedTetrahedralFilter
UnusedRGroupChecker
UpperBoundCalculator
UserSettings
Util
Util.StringScatterPlot
ValenceCheckOptions
ValenceCheckOptions.Builder
ValenceErrorChecker
ValenceFixer
ValencePropertyChecker
VersionInfo
ViewParameterConstants
WedgeCleanAction
WedgeCleanFixer
WedgeErrorChecker
WigglyBondChecker
WigglyDoubleBondChecker
WigglyDoubleBondFixer
WorkUnit
WorkUnitFactory
WSmolecule
XMLBasedConfigurationReader
XMLRPCServiceDescriptor