java.lang.Object
- chemaxon.checkers.AbstractStructureChecker
- - chemaxon.checkers.ComponentChecker<MolAtom>
  - - chemaxon.checkers.AtomChecker
    - - chemaxon.checkers.AtomQueryPropertyChecker

All Implemented Interfaces:

StructureChecker, chemaxon.license.Licensable, PropertyChangeListener, Cloneable, EventListener
```
@PublicAPI
public class AtomQueryPropertyChecker
extends AtomChecker
```
A descendant of AtomChecker detecting atoms having an query property set.

Since:

Marvin 5.6

Field Summary

Fields
Modifier and Type	Field	Description
`static String`	`PROPERTY_KEY_AROMATCITY`	Aromaticity atom query property.
`static String`	`PROPERTY_KEY_AROMATICITY_CHECKING`	Aromaticity checking property
`static String`	`PROPERTY_KEY_CONNECTION_COUNT`	Connection count atom query property.
`static String`	`PROPERTY_KEY_CONNECTION_COUNT_CHECKING`	Connection count checking property
`static String`	`PROPERTY_KEY_EXPLICIT_CONNECTION_COUNT`	Explicit connection count atom query property.
`static String`	`PROPERTY_KEY_EXPLICIT_CONNECTION_COUNT_CHECKING`	Explicit connection count checking property
`static String`	`PROPERTY_KEY_HYDROGEN_COUNT`	Hydrogen count atom query property.
`static String`	`PROPERTY_KEY_HYDROGEN_COUNT_CHECKING`	Hydrogen count checking property
`static String`	`PROPERTY_KEY_IMPLICIT_HYDROGEN_COUNT`	Implicit hydrogen count atom query property.
`static String`	`PROPERTY_KEY_IMPLICIT_HYDROGEN_COUNT_CHECKING`	Implicit hydrogen count checking property
`static String`	`PROPERTY_KEY_RING_BOND_COUNT`	Ring bond count atom query property.
`static String`	`PROPERTY_KEY_RING_BOND_COUNT_CHECKING`	Ring bond count checking property
`static String`	`PROPERTY_KEY_RING_COUNT`	Ring count atom query property.
`static String`	`PROPERTY_KEY_RING_COUNT_CHECKING`	Ring count checking property
`static String`	`PROPERTY_KEY_SMALLEST_RING_SIZE`	Smallest ring size atom query property.
`static String`	`PROPERTY_KEY_SMALLEST_RING_SIZE_CHECKING`	Smallest ring size checking property
`static String`	`PROPERTY_KEY_SMARTS_QUERY`	SMARTS query property
`static String`	`PROPERTY_KEY_SMARTS_QUERY_CHECKING`	SMARTS query checking property
`static String`	`PROPERTY_KEY_SUBSTITUTION_COUNT`	Substitution count atom query property.
`static String`	`PROPERTY_KEY_SUBSTITUTION_COUNT_CHECKING`	Substitution count checking property
`static String`	`PROPERTY_KEY_UNSATURATION`	Unsaturation atom query property.
`static String`	`PROPERTY_KEY_UNSATURATION_CHECKING`	Unsaturation checking property

Fields inherited from class chemaxon.checkers.AbstractStructureChecker
errorType, propertyChangeSupport

Fields inherited from interface chemaxon.checkers.StructureChecker
PROPERTY_KEY_VALID

Constructor Summary

Constructors
Constructor	Description
`AtomQueryPropertyChecker()`	Creates a new AtomQueryPropertyChecker instance, it detects all query properties by default.
`AtomQueryPropertyChecker(Map<String,String> params)`	Creates a new AtomQueryPropertyChecker instance to detect the given query properties.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`protected boolean`	`check(Molecule molecule, MolAtom atom)`	Checks if the component with index i has problem
`protected StructureCheckerResult`	`createResult(Molecule molecule, List<MolAtom> atoms)`	Creates a `StructureCheckerResult` from a `List` containing the components.
`boolean`	`equals(Object obj)`
`int`	`hashCode()`
`boolean`	`isAromaticityChecking()`	Gets the option determining if the checker detects aromaticity atom query properties or not.
`boolean`	`isConnectionCountChecking()`	Gets the option determining if the checker detects connection count atom query properties or not.
`boolean`	`isExplicitConnectionCountChecking()`	Gets the option determining if the checker detects explicit connection count atom query properties or not.
`boolean`	`isHydrogenCountChecking()`	Gets the option determining if the checker detects hydrogen count atom query properties or not.
`boolean`	`isImplicitHydrogenCountChecking()`	Gets the option determining if the checker detects implicit hydrogen count atom query properties or not.
`boolean`	`isRingBondCountChecking()`	Gets the option determining if the checker detects ring bond count atom query properties or not.
`boolean`	`isRingCountChecking()`	Gets the option determining if the checker detects ring count atom query properties or not.
`boolean`	`isSmallestRingSizeChecking()`	Gets the option determining if the checker detects smallest ring size atom query properties or not.
`boolean`	`isSmartsQueryChecking()`	Gets the option determining if the checker detects SMARTS query properties or not.
`boolean`	`isSubstitutionCountChecking()`	Gets the option determining if the checker detects substitution count atom query properties or not.
`boolean`	`isUnsaturationChecking()`	Gets the option determining if the checker detects unsaturation atom query properties or not.
`void`	`setAromaticityChecking(boolean value)`	Sets the option determining if the checker detects aromaticity atom query properties or not.
`void`	`setConnectionCountChecking(boolean value)`	Sets the option determining if the checker detects connection count atom query properties or not.
`void`	`setExplicitConnectionCountChecking(boolean value)`	Sets the option determining if the checker detects explicit connection count atom query properties or not.
`void`	`setHydrogenCountChecking(boolean value)`	Sets the option determining if the checker detects hydrogen count atom query properties or not.
`void`	`setImplicitHydrogenCountChecking(boolean value)`	Sets the option determining if the checker detects implicit hydrogen count atom query properties or not.
`void`	`setRingBondCountChecking(boolean value)`	Sets the option determining if the checker detects ring bond count atom query properties or not.
`void`	`setRingCountChecking(boolean value)`	Sets the option determining if the checker detects ring count atom query properties or not.
`void`	`setSmallestRingSizeChecking(boolean value)`	Sets the option determining if the checker detects smallest ring size atom query properties or not.
`void`	`setSmartsQueryChecking(boolean value)`	Sets the option determining if the checker detects SMARTS query properties or not.
`void`	`setSubstitutionCountChecking(boolean value)`	Sets the option determining if the checker detects substitution count atom query properties or not.
`void`	`setUnsaturationChecking(boolean value)`	Sets the option determining if the checker detects unsaturation atom query properties or not.
`String`	`toString()`

Methods inherited from class chemaxon.checkers.AtomChecker
getComponent, getComponentCount

Methods inherited from class chemaxon.checkers.ComponentChecker
check1, initialize

Methods inherited from class java.lang.Object
finalize, getClass, notify, notifyAll, wait, wait, wait

- Field Detail
  - PROPERTY_KEY_HYDROGEN_COUNT
```
public static final String PROPERTY_KEY_HYDROGEN_COUNT
```
    Hydrogen count atom query property.
    
    See Also:
    
    Constant Field Values
  - PROPERTY_KEY_CONNECTION_COUNT
```
public static final String PROPERTY_KEY_CONNECTION_COUNT
```
    Connection count atom query property.
    
    See Also:
    
    Constant Field Values
  - PROPERTY_KEY_EXPLICIT_CONNECTION_COUNT
```
public static final String PROPERTY_KEY_EXPLICIT_CONNECTION_COUNT
```
    Explicit connection count atom query property.
    
    See Also:
    
    Constant Field Values
  - PROPERTY_KEY_RING_COUNT
```
public static final String PROPERTY_KEY_RING_COUNT
```
    Ring count atom query property.
    
    See Also:
    
    Constant Field Values
  - PROPERTY_KEY_IMPLICIT_HYDROGEN_COUNT
```
public static final String PROPERTY_KEY_IMPLICIT_HYDROGEN_COUNT
```
    Implicit hydrogen count atom query property.
    
    See Also:
    
    Constant Field Values
  - PROPERTY_KEY_SMALLEST_RING_SIZE
```
public static final String PROPERTY_KEY_SMALLEST_RING_SIZE
```
    Smallest ring size atom query property.
    
    See Also:
    
    Constant Field Values
  - PROPERTY_KEY_AROMATCITY
```
public static final String PROPERTY_KEY_AROMATCITY
```
    Aromaticity atom query property.
    
    See Also:
    
    Constant Field Values
  - PROPERTY_KEY_SUBSTITUTION_COUNT
```
public static final String PROPERTY_KEY_SUBSTITUTION_COUNT
```
    Substitution count atom query property.
    
    See Also:
    
    Constant Field Values
  - PROPERTY_KEY_UNSATURATION
```
public static final String PROPERTY_KEY_UNSATURATION
```
    Unsaturation atom query property.
    
    See Also:
    
    Constant Field Values
  - PROPERTY_KEY_RING_BOND_COUNT
```
public static final String PROPERTY_KEY_RING_BOND_COUNT
```
    Ring bond count atom query property.
    
    See Also:
    
    Constant Field Values
  - PROPERTY_KEY_SMARTS_QUERY
```
public static final String PROPERTY_KEY_SMARTS_QUERY
```
    SMARTS query property
    
    See Also:
    
    Constant Field Values
  - PROPERTY_KEY_AROMATICITY_CHECKING
```
public static final String PROPERTY_KEY_AROMATICITY_CHECKING
```
    Aromaticity checking property
    
    See Also:
    
    Constant Field Values
  - PROPERTY_KEY_CONNECTION_COUNT_CHECKING
```
public static final String PROPERTY_KEY_CONNECTION_COUNT_CHECKING
```
    Connection count checking property
    
    See Also:
    
    Constant Field Values
  - PROPERTY_KEY_EXPLICIT_CONNECTION_COUNT_CHECKING
```
public static final String PROPERTY_KEY_EXPLICIT_CONNECTION_COUNT_CHECKING
```
    Explicit connection count checking property
    
    See Also:
    
    Constant Field Values
  - PROPERTY_KEY_HYDROGEN_COUNT_CHECKING
```
public static final String PROPERTY_KEY_HYDROGEN_COUNT_CHECKING
```
    Hydrogen count checking property
    
    See Also:
    
    Constant Field Values
  - PROPERTY_KEY_IMPLICIT_HYDROGEN_COUNT_CHECKING
```
public static final String PROPERTY_KEY_IMPLICIT_HYDROGEN_COUNT_CHECKING
```
    Implicit hydrogen count checking property
    
    See Also:
    
    Constant Field Values
  - PROPERTY_KEY_RING_BOND_COUNT_CHECKING
```
public static final String PROPERTY_KEY_RING_BOND_COUNT_CHECKING
```
    Ring bond count checking property
    
    See Also:
    
    Constant Field Values
  - PROPERTY_KEY_RING_COUNT_CHECKING
```
public static final String PROPERTY_KEY_RING_COUNT_CHECKING
```
    Ring count checking property
    
    See Also:
    
    Constant Field Values
  - PROPERTY_KEY_SMALLEST_RING_SIZE_CHECKING
```
public static final String PROPERTY_KEY_SMALLEST_RING_SIZE_CHECKING
```
    Smallest ring size checking property
    
    See Also:
    
    Constant Field Values
  - PROPERTY_KEY_SUBSTITUTION_COUNT_CHECKING
```
public static final String PROPERTY_KEY_SUBSTITUTION_COUNT_CHECKING
```
    Substitution count checking property
    
    See Also:
    
    Constant Field Values
  - PROPERTY_KEY_UNSATURATION_CHECKING
```
public static final String PROPERTY_KEY_UNSATURATION_CHECKING
```
    Unsaturation checking property
    
    See Also:
    
    Constant Field Values
  - PROPERTY_KEY_SMARTS_QUERY_CHECKING
```
public static final String PROPERTY_KEY_SMARTS_QUERY_CHECKING
```
    SMARTS query checking property
    
    See Also:
    
    Constant Field Values
- Constructor Detail
  - AtomQueryPropertyChecker
```
public AtomQueryPropertyChecker()
```
    Creates a new AtomQueryPropertyChecker instance, it detects all query properties by default.
  - AtomQueryPropertyChecker
```
public AtomQueryPropertyChecker(Map<String,String> params)
```
    Creates a new AtomQueryPropertyChecker instance to detect the given query properties.
    
    Parameters:
    
    params - a Map instance which contains String pairs. Key is the name of the parameter, value is "true" or "false".
- Method Detail
  - check
```
protected boolean check(Molecule molecule,
                        MolAtom atom)
```
    Description copied from class: ComponentChecker
    
    Checks if the component with index i has problem
    
    Specified by:
    
    check in class ComponentChecker<MolAtom>
    
    Parameters:
    
    molecule - is a Molecule instance
    
    atom - the current component to check
    
    Returns:
    
    true if the component has problem, false otherwise
  - createResult
```
protected StructureCheckerResult createResult(Molecule molecule,
                                              List<MolAtom> atoms)
```
    Description copied from class: ComponentChecker
    
    Creates a StructureCheckerResult from a List containing the components.
    
    Overrides:
    
    createResult in class AtomChecker
    
    Parameters:
    
    molecule - is a Molecule instance
    
    atoms - is an instance of List containing the problematic components
    
    Returns:
    
    a StructureCheckerResult containing all problematic component indices
  - equals
```
public boolean equals(Object obj)
```
    Overrides:
    
    equals in class AbstractStructureChecker
  - hashCode
```
public int hashCode()
```
    Overrides:
    
    hashCode in class AbstractStructureChecker
  - isAromaticityChecking
```
public boolean isAromaticityChecking()
```
    Gets the option determining if the checker detects aromaticity atom query properties or not.
    
    Returns:
    
    true if the aromaticity atom query properties are detected
  - isConnectionCountChecking
```
public boolean isConnectionCountChecking()
```
    Gets the option determining if the checker detects connection count atom query properties or not.
    
    Returns:
    
    true if the connection count atom query properties are detected
  - isExplicitConnectionCountChecking
```
public boolean isExplicitConnectionCountChecking()
```
    Gets the option determining if the checker detects explicit connection count atom query properties or not.
    
    Returns:
    
    true if the explicit connection count atom query properties are detected
  - isHydrogenCountChecking
```
public boolean isHydrogenCountChecking()
```
    Gets the option determining if the checker detects hydrogen count atom query properties or not.
    
    Returns:
    
    true if the hydrogen count atom query properties are detected
  - isImplicitHydrogenCountChecking
```
public boolean isImplicitHydrogenCountChecking()
```
    Gets the option determining if the checker detects implicit hydrogen count atom query properties or not.
    
    Returns:
    
    true if the implicit hydrogen count atom query properties are detected
  - isRingBondCountChecking
```
public boolean isRingBondCountChecking()
```
    Gets the option determining if the checker detects ring bond count atom query properties or not.
    
    Returns:
    
    true if the ring bond count atom query properties are detected
  - isRingCountChecking
```
public boolean isRingCountChecking()
```
    Gets the option determining if the checker detects ring count atom query properties or not.
    
    Returns:
    
    true if the ring count atom query properties are detected
  - isSmallestRingSizeChecking
```
public boolean isSmallestRingSizeChecking()
```
    Gets the option determining if the checker detects smallest ring size atom query properties or not.
    
    Returns:
    
    true if the smallest ring size atom query properties are detected
  - isSubstitutionCountChecking
```
public boolean isSubstitutionCountChecking()
```
    Gets the option determining if the checker detects substitution count atom query properties or not.
    
    Returns:
    
    true if the substitution count atom query properties are detected
  - isUnsaturationChecking
```
public boolean isUnsaturationChecking()
```
    Gets the option determining if the checker detects unsaturation atom query properties or not.
    
    Returns:
    
    true if the unsaturation atom query properties are detected
  - isSmartsQueryChecking
```
public boolean isSmartsQueryChecking()
```
    Gets the option determining if the checker detects SMARTS query properties or not.
    
    Returns:
    
    true if the SMARTS query properties are to be detected
  - setAromaticityChecking
```
public void setAromaticityChecking(boolean value)
```
    Sets the option determining if the checker detects aromaticity atom query properties or not.
    
    Parameters:
    
    value - if true, aromaticity atom query properties are detected
  - setConnectionCountChecking
```
public void setConnectionCountChecking(boolean value)
```
    Sets the option determining if the checker detects connection count atom query properties or not.
    
    Parameters:
    
    value - if true, connection count atom query properties are detected
  - setExplicitConnectionCountChecking
```
public void setExplicitConnectionCountChecking(boolean value)
```
    Sets the option determining if the checker detects explicit connection count atom query properties or not.
    
    Parameters:
    
    value - if true, explicit connection count atom query properties are detected
  - setHydrogenCountChecking
```
public void setHydrogenCountChecking(boolean value)
```
    Sets the option determining if the checker detects hydrogen count atom query properties or not.
    
    Parameters:
    
    value - if true, hydrogen count atom query properties are detected
  - setImplicitHydrogenCountChecking
```
public void setImplicitHydrogenCountChecking(boolean value)
```
    Sets the option determining if the checker detects implicit hydrogen count atom query properties or not.
    
    Parameters:
    
    value - if true, implicit hydrogen count atom query properties are detected
  - setRingBondCountChecking
```
public void setRingBondCountChecking(boolean value)
```
    Sets the option determining if the checker detects ring bond count atom query properties or not.
    
    Parameters:
    
    value - if true, ring bond count atom query properties are detected
  - setRingCountChecking
```
public void setRingCountChecking(boolean value)
```
    Sets the option determining if the checker detects ring count atom query properties or not.
    
    Parameters:
    
    value - if true, ring count atom query properties are detected
  - setSmallestRingSizeChecking
```
public void setSmallestRingSizeChecking(boolean value)
```
    Sets the option determining if the checker detects smallest ring size atom query properties or not.
    
    Parameters:
    
    value - if true, smallest ring size atom query properties are detected
  - setSubstitutionCountChecking
```
public void setSubstitutionCountChecking(boolean value)
```
    Sets the option determining if the checker detects substitution count atom query properties or not.
    
    Parameters:
    
    value - if true, substitution count atom query properties are detected
  - setUnsaturationChecking
```
public void setUnsaturationChecking(boolean value)
```
    Sets the option determining if the checker detects unsaturation atom query properties or not.
    
    Parameters:
    
    value - if true, unsaturation query properties are detected
  - setSmartsQueryChecking
```
public void setSmartsQueryChecking(boolean value)
```
    Sets the option determining if the checker detects SMARTS query properties or not.
    
    Parameters:
    
    value - of SMARTS query properties are to be detected
  - toString
```
public String toString()
```
    Overrides:
    
    toString in class AbstractStructureChecker

Class AtomQueryPropertyChecker

Field Summary

Fields inherited from class chemaxon.checkers.AbstractStructureChecker

Fields inherited from interface chemaxon.checkers.StructureChecker

Constructor Summary

Method Summary

Methods inherited from class chemaxon.checkers.AtomChecker

Methods inherited from class chemaxon.checkers.ComponentChecker

Methods inherited from class chemaxon.checkers.AbstractStructureChecker

Methods inherited from class java.lang.Object

Field Detail

PROPERTY_KEY_HYDROGEN_COUNT

PROPERTY_KEY_CONNECTION_COUNT

PROPERTY_KEY_EXPLICIT_CONNECTION_COUNT

PROPERTY_KEY_RING_COUNT

PROPERTY_KEY_IMPLICIT_HYDROGEN_COUNT

PROPERTY_KEY_SMALLEST_RING_SIZE

PROPERTY_KEY_AROMATCITY

PROPERTY_KEY_SUBSTITUTION_COUNT

PROPERTY_KEY_UNSATURATION

PROPERTY_KEY_RING_BOND_COUNT

PROPERTY_KEY_SMARTS_QUERY

PROPERTY_KEY_AROMATICITY_CHECKING

PROPERTY_KEY_CONNECTION_COUNT_CHECKING

PROPERTY_KEY_EXPLICIT_CONNECTION_COUNT_CHECKING

PROPERTY_KEY_HYDROGEN_COUNT_CHECKING

PROPERTY_KEY_IMPLICIT_HYDROGEN_COUNT_CHECKING

PROPERTY_KEY_RING_BOND_COUNT_CHECKING

PROPERTY_KEY_RING_COUNT_CHECKING

PROPERTY_KEY_SMALLEST_RING_SIZE_CHECKING

PROPERTY_KEY_SUBSTITUTION_COUNT_CHECKING

PROPERTY_KEY_UNSATURATION_CHECKING

PROPERTY_KEY_SMARTS_QUERY_CHECKING

Constructor Detail

AtomQueryPropertyChecker

AtomQueryPropertyChecker

Method Detail

check

createResult

equals

hashCode

isAromaticityChecking

isConnectionCountChecking

isExplicitConnectionCountChecking

isHydrogenCountChecking

isImplicitHydrogenCountChecking

isRingBondCountChecking

isRingCountChecking

isSmallestRingSizeChecking

isSubstitutionCountChecking

isUnsaturationChecking

isSmartsQueryChecking

setAromaticityChecking

setConnectionCountChecking

setExplicitConnectionCountChecking

setHydrogenCountChecking

setImplicitHydrogenCountChecking

setRingBondCountChecking

setRingCountChecking

setSmallestRingSizeChecking

setSubstitutionCountChecking

setUnsaturationChecking

setSmartsQueryChecking

toString