Package chemaxon.marvin.alignment

Enum AlignmentProperties

java.lang.Object

java.lang.Enum<AlignmentProperties>

chemaxon.marvin.alignment.AlignmentProperties

All Implemented Interfaces:

Serializable, Comparable<AlignmentProperties>

@PublicAPI
public enum AlignmentProperties
extends Enum<AlignmentProperties>
implements Serializable

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	AlignmentProperties.ColoringScheme
static class	AlignmentProperties.ColorNotSpecifiedCase
static class	AlignmentProperties.DegreeOfFreedomType
static class	AlignmentProperties.FlexibilityMode	Conformational flexibility treatment during the alignment for a pair of a molecule.
static class	AlignmentProperties.NodeType
static class	AlignmentProperties.OrientationType

Enum Constant Summary

Enum Constants

Enum Constant	Description
GAUSS_44_SAME
GAUSS_FAST_EXTENDED_ATOMTYPE
GAUSS_FAST_EXTENDED_ATOMTYPE_MCS	Deprecated.
GAUSS_FAST_PHARMACOPHORE
GAUSS_FAST_SHAPE_ONLY
PAIRED

Method Summary

Modifier and Type	Method	Description
AlignmentProperties.ColoringScheme	getColor()
AlignmentProperties.ColorNotSpecifiedCase	getNotSpec()
AlignmentProperties.OrientationType	getOrientation()
boolean	isDistancerangeSet()
static AlignmentProperties	valueOf(String name)	Returns the enum constant of this type with the specified name.
static AlignmentProperties[]	values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

GAUSS_44_SAME

public static final AlignmentProperties GAUSS_44_SAME

GAUSS_FAST_EXTENDED_ATOMTYPE

public static final AlignmentProperties GAUSS_FAST_EXTENDED_ATOMTYPE

GAUSS_FAST_SHAPE_ONLY

public static final AlignmentProperties GAUSS_FAST_SHAPE_ONLY

GAUSS_FAST_PHARMACOPHORE

public static final AlignmentProperties GAUSS_FAST_PHARMACOPHORE

PAIRED

public static final AlignmentProperties PAIRED

GAUSS_FAST_EXTENDED_ATOMTYPE_MCS

@Deprecated
public static final AlignmentProperties GAUSS_FAST_EXTENDED_ATOMTYPE_MCS

Deprecated.

Maximum common substructure based 3D alignment should not be used from Alignment anymore. For the same purpose use the more advanced MMPAlignment method. Note that this MCS option will be removed from further releases.

Method Detail

values

public static AlignmentProperties[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (AlignmentProperties c : AlignmentProperties.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static AlignmentProperties valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null

getColor

public AlignmentProperties.ColoringScheme getColor()

isDistancerangeSet

public boolean isDistancerangeSet()

getNotSpec

public AlignmentProperties.ColorNotSpecifiedCase getNotSpec()

getOrientation

public AlignmentProperties.OrientationType getOrientation()