@PublicAPI public enum AlignmentProperties extends java.lang.Enum<AlignmentProperties> implements java.io.Serializable
Modifier and Type | Class and Description |
---|---|
static class |
AlignmentProperties.ColoringScheme |
static class |
AlignmentProperties.ColorNotSpecifiedCase |
static class |
AlignmentProperties.DegreeOfFreedomType |
static class |
AlignmentProperties.FlexibilityMode
Conformational flexibility treatment during the alignment for a pair of a molecule.
|
static class |
AlignmentProperties.NodeType |
static class |
AlignmentProperties.OrientationType |
Enum Constant and Description |
---|
GAUSS_44_SAME |
GAUSS_FAST_EXTENDED_ATOMTYPE |
GAUSS_FAST_EXTENDED_ATOMTYPE_MCS
Deprecated.
|
GAUSS_FAST_PHARMACOPHORE |
GAUSS_FAST_SHAPE_ONLY |
PAIRED |
Modifier and Type | Method and Description |
---|---|
AlignmentProperties.ColoringScheme |
getColor() |
AlignmentProperties.ColorNotSpecifiedCase |
getNotSpec() |
AlignmentProperties.OrientationType |
getOrientation() |
boolean |
isDistancerangeSet() |
static AlignmentProperties |
valueOf(java.lang.String name)
Returns the enum constant of this type with the specified name.
|
static AlignmentProperties[] |
values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
public static final AlignmentProperties GAUSS_44_SAME
public static final AlignmentProperties GAUSS_FAST_EXTENDED_ATOMTYPE
public static final AlignmentProperties GAUSS_FAST_SHAPE_ONLY
public static final AlignmentProperties GAUSS_FAST_PHARMACOPHORE
public static final AlignmentProperties PAIRED
@Deprecated public static final AlignmentProperties GAUSS_FAST_EXTENDED_ATOMTYPE_MCS
Alignment
anymore. For the same purpose use
the more advanced MMPAlignment
method. Note that this MCS option
will be removed from further releases.public static AlignmentProperties[] values()
for (AlignmentProperties c : AlignmentProperties.values()) System.out.println(c);
public static AlignmentProperties valueOf(java.lang.String name)
name
- the name of the enum constant to be returned.java.lang.IllegalArgumentException
- if this enum type has no constant with the specified namejava.lang.NullPointerException
- if the argument is nullpublic AlignmentProperties.ColoringScheme getColor()
public boolean isDistancerangeSet()
public AlignmentProperties.ColorNotSpecifiedCase getNotSpec()
public AlignmentProperties.OrientationType getOrientation()