Package chemaxon.marvin.alignment
Enum AlignmentProperties
- java.lang.Object
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- java.lang.Enum<AlignmentProperties>
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- chemaxon.marvin.alignment.AlignmentProperties
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- All Implemented Interfaces:
Serializable
,Comparable<AlignmentProperties>
@PublicAPI public enum AlignmentProperties extends Enum<AlignmentProperties> implements Serializable
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Nested Class Summary
Nested Classes Modifier and Type Class Description static class
AlignmentProperties.ColoringScheme
static class
AlignmentProperties.ColorNotSpecifiedCase
static class
AlignmentProperties.DegreeOfFreedomType
static class
AlignmentProperties.FlexibilityMode
Conformational flexibility treatment during the alignment for a pair of a molecule.static class
AlignmentProperties.NodeType
static class
AlignmentProperties.OrientationType
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Enum Constant Summary
Enum Constants Enum Constant Description GAUSS_44_SAME
GAUSS_FAST_EXTENDED_ATOMTYPE
GAUSS_FAST_EXTENDED_ATOMTYPE_MCS
Deprecated.GAUSS_FAST_PHARMACOPHORE
GAUSS_FAST_SHAPE_ONLY
PAIRED
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description AlignmentProperties.ColoringScheme
getColor()
AlignmentProperties.ColorNotSpecifiedCase
getNotSpec()
AlignmentProperties.OrientationType
getOrientation()
boolean
isDistancerangeSet()
static AlignmentProperties
valueOf(String name)
Returns the enum constant of this type with the specified name.static AlignmentProperties[]
values()
Returns an array containing the constants of this enum type, in the order they are declared.
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Enum Constant Detail
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GAUSS_44_SAME
public static final AlignmentProperties GAUSS_44_SAME
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GAUSS_FAST_EXTENDED_ATOMTYPE
public static final AlignmentProperties GAUSS_FAST_EXTENDED_ATOMTYPE
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GAUSS_FAST_SHAPE_ONLY
public static final AlignmentProperties GAUSS_FAST_SHAPE_ONLY
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GAUSS_FAST_PHARMACOPHORE
public static final AlignmentProperties GAUSS_FAST_PHARMACOPHORE
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PAIRED
public static final AlignmentProperties PAIRED
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GAUSS_FAST_EXTENDED_ATOMTYPE_MCS
@Deprecated public static final AlignmentProperties GAUSS_FAST_EXTENDED_ATOMTYPE_MCS
Deprecated.Maximum common substructure based 3D alignment should not be used fromAlignment
anymore. For the same purpose use the more advancedMMPAlignment
method. Note that this MCS option will be removed from further releases.
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Method Detail
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values
public static AlignmentProperties[] values()
Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:for (AlignmentProperties c : AlignmentProperties.values()) System.out.println(c);
- Returns:
- an array containing the constants of this enum type, in the order they are declared
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valueOf
public static AlignmentProperties valueOf(String name)
Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)- Parameters:
name
- the name of the enum constant to be returned.- Returns:
- the enum constant with the specified name
- Throws:
IllegalArgumentException
- if this enum type has no constant with the specified nameNullPointerException
- if the argument is null
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getColor
public AlignmentProperties.ColoringScheme getColor()
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isDistancerangeSet
public boolean isDistancerangeSet()
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getNotSpec
public AlignmentProperties.ColorNotSpecifiedCase getNotSpec()
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getOrientation
public AlignmentProperties.OrientationType getOrientation()
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