Package chemaxon.marvin.beans

Class MSketchPane

    • Field Detail

      • SM_SELECT

        public static final int SM_SELECT
        Select mode.
        Since:
        4.0, 02/17/2004
        See Also:
        Constant Field Values

      • SM_DELETE

        public static final int SM_DELETE
        Delete mode.
        Since:
        4.0, 02/17/2004
        See Also:
        Constant Field Values

      • SM_ATOM

        public static final int SM_ATOM
        Atom mode. Additional flags must be used to specify the element type. Example: 
         setSketchMode(MSketchPane.SM_Atom | (6 << MSketchPane.SM_FLAGS_OFF));
        Since:
        4.0, 02/17/2004
        See Also:
        Constant Field Values

      • SM_BOND

        public static final int SM_BOND
        Bond mode. Additional flags must be used to specify the bond type. Example: 
         setSketchMode(MSketchPane.SM_BOND | (1 << MSketchPane.SM_FLAGS_OFF));
        Since:
        4.0, 02/17/2004
        See Also:
        Constant Field Values

      • SM_SELECT_LASSO

        public static final int SM_SELECT_LASSO
        Lasso select mode.
        See Also:
        Constant Field Values

      • SM_MASK

        public static final int SM_MASK
        Sketch mode mask.
        Since:
        4.0, 02/17/2004
        See Also:
        Constant Field Values

      • SM_FLAGS_OFF

        public static final int SM_FLAGS_OFF
        Offset of flags in sketch mode.
        Since:
        4.0, 02/17/2004
        See Also:
        Constant Field Values

    • Constructor Detail

      • MSketchPane

        public MSketchPane()
        Constructs the sketcher.
        Throws:
        chemaxon.license.LicenseException - if no valid license found

      • MSketchPane

        public MSketchPane​(UserSettings settings)
        Constructs the sketcher with the specified user settings object.
        Parameters:
        settings - the user settings
        Throws:
        chemaxon.license.LicenseException - if no valid license found
        Since:
        Marvin 3.0

      • MSketchPane

        public MSketchPane​(UserSettings settings,
                   boolean loadtmpl)
        Constructs the sketcher with the specified user settings object.
        Parameters:
        settings - the user settings
        loadtmpl - load template structures and abbreviated groups immediately ( true) or not (false)
        Throws:
        chemaxon.license.LicenseException - if no valid license found
        Since:
        Marvin 3.4.2

      • MSketchPane

        public MSketchPane​(UserSettings settings,
                   boolean loadtmpl,
                   JComponent parent)
        Constructs the sketcher with the specified user settings object.
        Parameters:
        settings - the user settings
        loadtmpl - load template structures and abbreviated groups immediately ( true) or not (false)
        parent - the parent Component of the MSketchPane
        Throws:
        chemaxon.license.LicenseException - if no valid license found
        Since:
        Marvin 5.12

    • Method Detail

      • getCanvasComponent

        public JComponent getCanvasComponent()
        Determines canvas component of MarvinSketch. This method is required to add new eventlistener to MarvinSketch. (e.g.: getCanvasComponent().addMouseListener(actionListener); This method is required for creating a custom popup menu.)
        Returns:
        Canvas component of MarvinSketch.
        Since:
        Marvin 2.9.12
        See Also:
        MarvinPane.setPopupMenusEnabled(boolean)

      • setAutoScale

        public void setAutoScale​(boolean as)
        Sets the autoscale property. If autoscale is true the molecule is sized to fit on the molecule panel.
        Parameters:
        as - set to true to enable autoscale

      • getAutoScale

        public boolean getAutoScale()
        Returns autoscale property.
        Returns:
        true, if autoscale is enabled

      • addPropertyChangeListener

        public void addPropertyChangeListener​(String propertyName,
                                      PropertyChangeListener listener)
        Adds a PropertyChangeListener for a specific property. The listener will be invoked only when a call on firePropertyChange names that specific property.

        If listener is null, no exception is thrown and no action is performed.

        MarvinSketch: parameters and events

        Overrides:
        addPropertyChangeListener in class Container
        Parameters:
        propertyName - the name of the property to listen on
        listener - the PropertyChangeListener to be added

      • getMol

        public Molecule getMol()
        Returns the clone of the current molecule being on the canvas. In case this molecule is changed, it will not affect the content of the canvas.
        Returns:
        the molecule

      • getMol

        public String getMol​(String fmt)
        Gets the molecule in a text format. The format descriptor string can also contain export options. Format and options are separated by a colon, multiple options can be separated by commas. See the text formats and their options on the File Formats in Marvin page. Examples: 
         s1 = msketch.getMol("mol");
 s2 = msketch.getMol("smiles:a-H"); // aromatize and remove Hydrogens
        Parameters:
        fmt - the format descriptor string
        Returns:
        the molecule in the specified format

      • setMol

        public void setMol​(Molecule m)
        Sets the molecule. Initialization is always performed.
        Parameters:
        m - the molecule

      • setMol

        @Deprecated
public void setMol​(Molecule m,
                   boolean init)
        Deprecated.
        use setMol(Molecule) instead of this method.
        Sets the molecule.
        Parameters:
        m - the molecule
        init - parameter is not used

      • setMol

        public void setMol​(String s)
        Starts loading a molecule into the sketcher. The argument can be a molecule in text format, or a reference/URL to a molecule file. The file format and/or import options can be specified if the argument is in one of the following forms: "file{options}", "file{format:}", or "file{format:options}". See the text formats and their options on the File Formats in Marvin page.
        Examples:
        setMol(dir+fileSeparator+"foo.xyz.gz{gzip:xyz:f1.4C4}");
        setMol("CCCC=O");
        Parameters:
        s - molfile contents, URL or (Unix) filename

      • setMol

        public void setMol​(String s,
                   String opts)
        Starts loading a molecule into the sketcher. The first argument can be a molecule in text format, or a reference/URL to a molecule file. The file format and/or import options can be specified if the second argument is in one of the following forms: "options", "format:", or "format:options". See the text formats and their options on the File Formats in Marvin page.
        Parameters:
        s - molfile contents, URL or (Unix) filename
        opts - options or null
        Since:
        Marvin 3.3

      • setMol

        public void setMol​(File f,
                   String opts)
        Sets the molecule. The file format and/or import options can be specified with the opts argument in one of the following forms: "options", "format:", or "format:options". See the text formats and their options on the File Formats in Marvin page.
        Example: setMol(new File(dir, "foo.xyz.gz"), "gzip:xyz:f1.4C4");
        Parameters:
        f - the molecule file
        opts - import options or null

      • getDocument

        public MDocument getDocument()
        Gets the document.
        Returns:
        the document
        Since:
        Marvin 3.4, 06/03/2004

      • setDocument

        public void setDocument​(MDocument doc)
        Sets the document.
        Parameters:
        doc - the document
        Since:
        Marvin 3.4, 06/03/2004

      • getSelection

        public Molecule getSelection()
        Gets a clone of the selection.
        Returns:
        the selection

      • getObjectAtPointer

        public Object getObjectAtPointer()
        Get the object at the mouse pointer.
        Returns:
        a MolAtom or MolBond object.

      • getPiece

        public String getPiece​(String fmt)
        Gets the current molecule piece in the specified format.
        Parameters:
        fmt - the format
        Returns:
        the piece in the specified molecule file format
        See Also:
        getMol(java.lang.String)

      • setPiece

        public void setPiece​(String s)
        Sets the molecule piece.
        Parameters:
        s - the piece in some molecule file format

      • getImage

        public Image getImage​(double scale)
        Gets the canvas contents as an image using a scale factor.
        Examples:
        To get an image with a scale factor equivalent to 100% magnification: getImage(getDefaultScale());
        To get an image with the actual scale factor: getImage(getScale());
        Parameters:
        scale - the absolute scale factor, see getScale()
        Returns:
        the molecule image
        Since:
        Marvin 4.0, 07/09/2005

      • getImage

        public Image getImage​(Dimension size)
        Gets the canvas contents as an image scaled to fit in the specified rectangle. The best width/height ratio can be determined using the getBoundRectSize() method.
        Parameters:
        size - the image size
        Returns:
        the molecule image
        Since:
        Marvin 4.0, 07/09/2005

      • getBoundRectSize

        public double[] getBoundRectSize()
        Gets the size of the bounding rectangle.
        Returns:
        two-element array containing the width and height in C-C bond length units
        Since:
        Marvin 4.0, 07/09/2005
        See Also:
        MolBond.CCLENGTH, getScale()

      • getDefaultScale

        public static double getDefaultScale()
        Returns the default scale factor which is equivalent to 100% magnification.
        Returns:
        default displayed length of a C-C bond in pixels

      • getScale

        public double getScale()
        Returns the scale factor of the current magnification. The scale factor determines the displayed size of a Carbon-Carbon single bond measured in pixels. In case the magnification is 100%, the returned scale factor equals with the value of getDefaultScale().
        Returns:
        displayed length of a C-C bond in pixels
        See Also:
        MolBond.CCLENGTH

      • setScale

        public void setScale​(double m)
        Sets the scale factor and changes magnification of the canvas. The scale factor determines the displayed size of a Carbon-Carbon single bond measured in pixels. In case the value of getDefaultScale() is set, the magnification of the canvas will be set to 100%.
        Parameters:
        m - displayed length of a C-C bond in pixels
        See Also:
        MolBond.CCLENGTH

      • getStickdst

        public double getStickdst()
        Gets the sticking distance.
        Returns:
        the stick distance in C-C bond length units
        See Also:
        MolBond.CCLENGTH

      • setStickdst

        public void setStickdst​(double d)
        Sets the sticking distance.
        Parameters:
        d - the stick distance in C-C bond length units
        See Also:
        MolBond.CCLENGTH

      • getMergedst

        public double getMergedst()
        Gets the merge distance.
        Returns:
        the merge distance in C-C bond length units
        See Also:
        MolBond.CCLENGTH

      • setMergedst

        public void setMergedst​(double d)
        Sets the merge distance.
        Parameters:
        d - the merge distance in C-C bond length units
        See Also:
        MolBond.CCLENGTH

      • getUndo

        public int getUndo()
        Gets the maximum undo depth.
        Returns:
        maximum history length

      • setUndo

        public void setUndo​(int u)
        Sets the maximum undo depth.
        Parameters:
        u - maximum history length

      • getReactionSupport

        public boolean getReactionSupport()
        Is reaction drawing supported?
        Returns:
        true if supported, false otherwise

      • setReactionSupport

        public void setReactionSupport​(boolean v)
        Allows or disallows reaction drawing.
        Parameters:
        v - true to allow, false to disallow

      • isReactionErrorVisible

        @Deprecated
public boolean isReactionErrorVisible()
        Deprecated.
        As of Version 5.3.2, this method is deprecated and has no replacement. It will be removed in a future version of Marvin.

        Are reaction errors highlighted?

        Returns:
        false
        Since:
        Marvin 2.9.13

      • isValenceErrorVisible

        public boolean isValenceErrorVisible()
        Are valence errors highlighted?
        Returns:
        True, if valence errors are highlighted with underline.
        Since:
        Marvin 2.9.13

      • setValenceErrorVisible

        public void setValenceErrorVisible​(boolean v)
        Shows or hides valence errors
        Parameters:
        v - True, underlines atom symbols in case valence errors.
        Since:
        Marvin 2.9.13

      • isBondDraggedAlong

        public boolean isBondDraggedAlong()
        Is the currently used bond shown at the mouse cursor?
        Returns:
        true if the bond is dragged along by the mouse cursor, false otherwise
        Since:
        Marvin 3.5, 09/30/2004

      • setBondDraggedAlong

        public void setBondDraggedAlong​(boolean v)
        Sets the visibility of the currently used bond at the mouse cursor.
        Parameters:
        v - true to drag along the bond by the mouse cursor, false to hide it
        Since:
        Marvin 3.5, 09/30/2004

      • getSimpView

        @Deprecated
public int getSimpView()
        Deprecated.
        as of Marvin 3.5, replaced by isBondDraggedAlong()
        Gets the visibility of the object in hand.
        Returns:
        0 normally, 1 if the objects in hand are invisible

      • setSimpView

        @Deprecated
public void setSimpView​(int v)
        Deprecated.
        as of Marvin 3.5, replaced by setBondDraggedAlong(boolean)
        Hides the object in hand.
        Parameters:
        v - 0 for normal behaviour, 1 to hide bond in hand

      • getMag

        @Deprecated
public double getMag()
        Deprecated.
        As of Marvin 2.8.1, replaced by getScale()
        Returns:
        the magnification

      • setMag

        @Deprecated
public void setMag​(double m)
        Deprecated.
        As of Marvin 2.8.1, replaced by setScale()
        Parameters:
        m - the magnification

      • writeExternal

        public void writeExternal​(ObjectOutput out)
                   throws IOException
        Saves object state. For internal use only! This method does not implement the Externalizable interface. It is called by the writeExternal method of class MSketch, which does implement it.
        Overrides:
        writeExternal in class MarvinPane
        Parameters:
        out - the stream to write the object to
        Throws:
        IOException - Includes any I/O exceptions that may occur
        Since:
        Marvin 3.5, 2004/11/01

      • readExternal

        public void readExternal​(ObjectInput in)
                  throws IOException
        Restores object state. For internal use only! This method does not implement the Externalizable interface. It is called by the readExternal method of class MSketch, which does implement it.
        Overrides:
        readExternal in class MarvinPane
        Parameters:
        in - the stream to read data from in order to restore the object
        Throws:
        IOException - if I/O errors occur
        ClassNotFoundException - If the class for an object being restored cannot be found.
        Since:
        Marvin 3.5, 2004/11/01

      • setMrvWithSettings

        @Deprecated
public void setMrvWithSettings​(String mrvsource)
        Deprecated.
        use setMol(String)
        Sets the molecule and its display settings. Settings can be imported if the MRV source includes display infos.
        Parameters:
        mrvsource - the MRV source
        Since:
        4.0 07/01/2005
        See Also:
        getMrvWithSettings()

      • isCloseEnabled

        public boolean isCloseEnabled()
        Determines if the File->Close menu item is enabled or not.
        Returns:
        True, if Close is enabled in the menu, else false.
        Since:
        4.0 07/05/2005
        See Also:
        setCloseEnabled(boolean)

      • setCloseEnabled

        public void setCloseEnabled​(boolean b)
        Set the accessibility of the Close menu item in the File menu.
        Parameters:
        b - True to enable close operation from the file menu. False to set it to disabled.
        Since:
        4.0 07/05/2005
        See Also:
        isCloseEnabled()

      • undo

        public void undo()
        Invokes an undo command.

      • redo

        public void redo()
        Invokes a redo command.

      • setConfirmExit

        public void setConfirmExit​(boolean b)
        Sets to drop confirmation dialog about exit or not.
        Parameters:
        b - True, confirmation dialog will be appear by exit if modifications were not saved, else false.

      • isConfirmExit

        public boolean isConfirmExit()
        Gets whether the confirmation dialog will be appear or not by exit.
        Returns:
        True, confirmation dialog will be appear by exit if modifications were not saved, else false.

      • isLoadedMolModified

        public boolean isLoadedMolModified()
        Determines whether the original molecule that is loaded in is modified or not.
        Returns:
        If modified returns with true, else false.
        Since:
        5.0.2 02/29/2008

      • doPaste

        public void doPaste()
        Invokes Paste action.
        Specified by:
        doPaste in class MarvinPane
        Since:
        Marvin 5.0

      • clearHistory

        public void clearHistory()
        Reset undo queue.
        Since:
        Marvin 4.1.11 07/06/2007

      • getCommonActions

        @Deprecated
public chemaxon.marvin.common.swing.action.CommonActions getCommonActions()
        Deprecated.
        at N/A (before 02/12/2015)
        Description copied from class: MarvinPane
        Gets the common actions.
        Overrides:
        getCommonActions in class MarvinPane
        Returns:
        the actions

      • centralizeMoleculeDisplay

        public void centralizeMoleculeDisplay()
        Puts the molecule into the center of the display.

      • setDisabledGroupTypes

        public void setDisabledGroupTypes​(List<String> disabledGroupTypes)

      • getDisabledGroupTypes

        public List<String> getDisabledGroupTypes()

      • showStartupSelector

        public void showStartupSelector()
        This method is used in startup time to throw up a skin selector dialog.

      • getMolPanel

        public chemaxon.marvin.sketch.swing.SketchPanel getMolPanel()
        Description copied from class: MarvinPane
        Returns the underlying panel.
        Overrides:
        getMolPanel in class MarvinPane
        Returns:
        the underlying panel