GraphicScene (Marvin API documentation (c) 1998-2019 ChemAxon Ltd.)

java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - javax.swing.JComponent
    - - javax.swing.JPanel
      - chemaxon.marvin.space.GraphicScene

All Implemented Interfaces:

chemaxon.marvin.util.CallbackIface, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.media.opengl.GLEventListener
```
@PublicAPI
public class GraphicScene
extends javax.swing.JPanel
implements javax.media.opengl.GLEventListener, chemaxon.marvin.util.CallbackIface
```
GraphicScene is the main "entry point" to MarvinSpace. It is the top level class of the visualization class hierarchy. It extends JPanel to be able to use it as a swing component, and represents a hardware accelerated OpenGL2 context called canvas.
GraphicScene (scene) consits of cells, represented by the GraphicCell class. By default the entire scene is one cell. Cells visualize GraphicComponents (components) associtated to them. Visualization settings are primarily passed to the scene namely camera view, projection, rotation, zooming, etc. Component specific settings are passed to each individual component by the cells.
Breif overview of main functions:
- content & layout: The size of the OpenGL2 canvas; size, number and orientaion of cells.
- component management: Adding new components, removing existing components.
- event handling: Delivering events to graphics objects by group: scene events, cell events and component events are distinguished.
- active cell, selected components: Restricting settings to specific parts of the scene.
- location & selection of components
- viewing transformations
- remdering: Drawing visible components
Example of typical usage:
```
 GraphicScene graphicScene = new GraphicScene( rowCount, columnCount );
 graphicScene.setSize(600, 600);
 this.getContentPane().add(graphicScene);
 this.show();

 graphicScene.getEventHandler().readMolecule(moleculeFile.pdb);
 graphicScene.processEvent("Protein.DrawType", "Stick");
 graphicScene.processEvent( "Ligand.DrawType", "Spacefill");
 graphicScene.processEvent( "Quality", "High");
 
```
Since:

Marvin 4.0.2

Version:

MarvinSpace 1.0

Author:

Judit Papp, Miklos Vargyas

See Also:

Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class javax.swing.JPanel
  javax.swing.JPanel.AccessibleJPanel
- Nested classes/interfaces inherited from class javax.swing.JComponent
  javax.swing.JComponent.AccessibleJComponent
- Nested classes/interfaces inherited from class java.awt.Container
  java.awt.Container.AccessibleAWTContainer
- Nested classes/interfaces inherited from class java.awt.Component
  java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field and Description
`static int`	`CELL_RANGE`
`static int`	`COMPONENT_RANGE`
`static java.lang.String`	`GLInfo`
`static int`	`MODE_MOVING`
`static int`	`MODE_STANDING`
`static java.lang.String`	`MSPACE_CONFIG_DEFAULT_PATH`
`static int`	`SCENE_RANGE`
`static int`	`VERBOSE_LEVEL_BASIC`
`static int`	`VERBOSE_LEVEL_DEVEL`
`static int`	`VERBOSE_LEVEL_NONE`

Fields inherited from class javax.swing.JComponent
listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component
accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors
Constructor and Description
`GraphicScene()` Creates a hardware accelerated and double buffered `GraphicScene`.
`GraphicScene(int rowCount, int columnCount)` Creates a hardware accelerated and double buffered GraphicScene.

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`void`	`activateContainerCell(GraphicComponent component)` The containing cell of the GraphicComponent will be the active cell of the scene.
`boolean`	`addComponent(GraphicComponent component)` Adds a component to the active or to the first cell.
`boolean`	`addComponent(GraphicComponent component, int cellIndex)` Adds a component to the cell having the given index.
`boolean`	`addComponentToEmptyCell(GraphicComponent gc)` Adds a component to an empty cell.
`chemaxon.marvin.space.CoordinateComponent`	`addCoordinateSystem(int cellIndex)` Adds a dummy graphic component that represents the coordinate system.
`void`	`addListToDelete(int list)` Adds a gl list id to the deletion list
`java.lang.Object`	`callback(java.lang.String eventID, java.lang.Object value)`
`void`	`clearSelection(int index)` Sets all components and parts of components to be unselected in the given cell.
`boolean`	`componentBecameSelected(int cellIdx)` Returns true if a component became selected previously in the given cell.
`boolean`	`componentBecameUnselected(int cellIdx)` Returns true if a component became unselected previously in the given cell.
`boolean`	`containsComponent(GraphicComponent gc)` Returns true if the component exists in the scene.
`int`	`createImage(java.nio.Buffer buf, int imageWidth, int imageHeight)`
`void`	`createNewCell()` Sets an empty cell to be the active cell.
`void`	`deactivateActiveCell()` Sets the active cell to be no longer active.
`void`	`display(javax.media.opengl.GLAutoDrawable glAutoDrawable)` Warning: this function should not be called directly, use `refresh()` or `redraw()` instead.
`void`	`displayChanged(javax.media.opengl.GLAutoDrawable glAutoDrawable, boolean b, boolean b1)` Called by the system.
`void`	`dispose(javax.media.opengl.GLAutoDrawable glad)`
`void`	`exclusiveSelection(chemaxon.marvin.space.UOID id)` Exclusive selection in the given component in its container cell.
`void`	`extendSelection(chemaxon.marvin.space.UOID id)` Additive selection in the given component in its container cell.
`void`	`fadeSelectedComponents()` Sets the drawing mode of all selected elements to faded so it will be hardly visible, and prevents them from clicking.
`void`	`fadeUnselectedComponents()` Sets the drawing mode of all unselected elements to faded so it will be hardly visible, and prevents them from clicking.
`GraphicCell`	`getActiveCell()` Returns the active cell of the scene.
`int`	`getActiveCellIndex()` Returns the index of the active cell.
`java.util.ArrayList`	`getAllComponents(java.lang.Class c)`
`java.awt.Color`	`getBackgroundColor()` Returns the background color of the scene.
`float[]`	`getBackgroundColorF()`
`java.awt.image.BufferedImage`	`getBufferedImage()` Returns the Canvas as a BufferedImage with the same size in pixels.
`GraphicCell`	`getCell(int cellIndex)` Returns the `GraphicCell` which has the given index.
`int`	`getCellButtom()` Returns the y coordinate of the buttom of the active cell in pixels.
`int`	`getCellCount()` Returns the number of cells in the scene.
`java.lang.String`	`getCellDrawProperty(int cellIdx, java.lang.String name)` Returns the draw property from the given cell or null if not defined.
`java.lang.String`	`getCellDrawProperty(java.lang.String name)` Returns the draw property from the active cell or null if there is no active cell or the property is not defined in the active cell.
`int`	`getCellHeight()` Returns the height of the cells.
`int`	`getCellLeft()` Returns the x coordinate of the left edge of the active cell.
`int`	`getCellRight()` Returns the x coordinate of the right edge of the active cell.
`int`	`getCellTop()` Returns the y coordinate of the top of the active cell.
`int`	`getCellWidth()` Returns the width of the cells.
`int`	`getColumnCount()` Returns the number of columns in the scene.
`GraphicComponent`	`getControllableObject(java.lang.String type)` Returns a selected component from the active cell what can be controlled by the given tye controller.
`java.lang.String`	`getDrawProperty(java.lang.String name)` Returns the draw property of the scene or null if the property is not defined.
`chemaxon.marvin.space.MSpaceEventHandler`	`getEventHandler()` Returns the event handler of the scene.
`javax.media.opengl.GL2`	`getGL()` Returns the OpenGL2 interface.
`javax.media.opengl.GLAutoDrawable`	`getGLAutoDrawable()` Returns the GLAutoDrawable object.
`java.awt.Component`	`getGLCanvas()` Returns the GL2 canvas.
`java.lang.String`	`getGLInfo(boolean extended)` Returns the OpenGL2 Renderer, Version, and Vendor and Extensions in VERBOSE_LEVEL_DEVEL mode.
`GraphicComponent`	`getGraphicComponent(int componentIndex)` Returns the `GraphicComponent` having the given index in the active cell.
`GraphicComponent`	`getGraphicComponent(int cellIndex, int componentIndex)` Returns the `GraphicComponent` of the given cell.
`GraphicComponent`	`getGraphicComponent(chemaxon.marvin.space.UOID id)` Returns the `GraphicComponent` with the given id.
`int`	`getGraphicComponentCount()` Returns the total number of `GraphicComponent`s in the cells.
`int`	`getRowCount()` Returns the number of rows in the scene.
`double`	`getShiftX(int cellIndex)` Returns corrected shifting value of the given cell.
`double`	`getShiftY(int cellIndex)` Returns corrected shifting value of the given cell.
`float[]`	`getTransformationCenter()` Returns the center of transformation of the active cell or null if there is no active cell.
`int`	`getVerboseLevel()` Gets the verbose level.
`int`	`getViewportHeight()` Returns the phisical height of the viewport.
`int`	`getViewportWidth()` Returns the phisical width of the viewport.
`boolean`	`hasSelectedComponent()` Returns true if there is at least 1 selected component in the active cell.
`boolean`	`hasSelectedComponentElement()` Returns true if there is at least 1 selected `ComponentElement` in the active cell.
`void`	`hideAllComponents(java.lang.Class c)` Sets all components of the given class in the active cell to be invisible.
`void`	`hideAllMonitors()` Sets all monitor component of the active cell to invisible.
`void`	`hideSelectedComponents()` Hides all selected components from the active cell with all related components (connected monitors, surface of a molecule).
`void`	`hideUnselectedComponents()` Hides all unselected components from the active cell with all related components (connected monitors, surface of a molecule).
`void`	`init(javax.media.opengl.GLAutoDrawable glAutoDrawable)` Called by the drawable immediately after the OpenGL2 context is initialized for the first time.
`void`	`invertSelection(chemaxon.marvin.space.UOID id)` The previously picked part of the component will be selected if it was unselected and vice versa.
`boolean`	`isActiveCell(int cellIndex)` Returns true if the cell having `cellIndex` is the active cell of the scene.
`boolean`	`isAntialiasEnabled()` Returns true if full-screen antialias is enabled.
`boolean`	`isGLInitialized()` Returns true if the OpenGL2 canvas is already initialized.
`boolean`	`isSmoothBackgroundEnabled()` Returns true if the background is enabled to be smooth, so that it does not have a homogenous color.
`boolean`	`isTransparentBackgroundEnabled()` Returns true if the background is transparent.
`boolean`	`isVerbose()` Gets the verbose level.
`int`	`locateCell(int x, int y)` Returns the internal index of the cell under x,y position.
`chemaxon.marvin.space.UOID`	`locateCellId(int x, int y)` Returns the id of the cell under x, y position.
`chemaxon.marvin.space.UOID`	`locateObject(int x, int y)` Returns the identifire of the object under x,y position.
`chemaxon.marvin.space.UOID`	`locateObject(int x, int y, java.lang.Class componentClass)` Returns the identifire of the given class object under x,y position.
`boolean`	`locationNearEdge(int x, int y)` Tells whether the given location is near to any edges of any cell.
`boolean`	`locationNearEdgeX(int x, int y)` Tells whether the given location is near the vertical edges of any cell.
`boolean`	`locationNearEdgeY(int x, int y)` Tells whether the given location is near the horizontal edges of any cell.
`void`	`measureFrameRate()` Measures frame rate of drawing.
`void`	`paint(java.awt.Graphics g)`
`static void`	`printProperties()`
`void`	`processAwtEvent(java.awt.AWTEvent evt, java.lang.String evtID, java.lang.String evtValue)` The given awt event will go to the queue of events, and will be performed during the next draw.
`void`	`processCellEvent(java.lang.String evtID, java.lang.String evtValue)` The given event will go to the queue of events, and will be performed during the next draw.
`void`	`processComponentEvent(java.lang.Object component, java.lang.String evtID, java.lang.String evtValue)` The given event will go to the queue of events, and will be performed during the next draw.
`void`	`processEvent(java.lang.String evtID, java.lang.String evtValue)` The given event will go to the queue of events, and will be performed during the next draw.
`void`	`redraw()` Redraws the entire scene.
`void`	`refresh()`
`void`	`removeAllComponents()` Removes all component from the scene and clears the selection panel.
`void`	`removeAllComponents(java.lang.Class c)` Removes all component from the scene and clears the selection panel.
`void`	`removeComponent(GraphicComponent component)` Removes a component from the scene.
`void`	`removeComponent(chemaxon.marvin.space.UOID componentId)` Removes a component from the scene.
`PharmacophorePoint`	`removePharmacophorePoint(ComponentElement ce)`
`void`	`removeSelectedComponents()` Removes all selected components from the active cell with all related components (connected monitors, surface of a molecule).
`void`	`removeUnselectedComponents()` Removes all unselected components from the active cell with all related components (connected monitors, surface of a molecule).
`void`	`removeUnselectedMonitors()` Removes all unselected monitor component from the scene.
`void`	`resetAll()` Resets view settings of all cells including rotation, zoom and shifting.
`void`	`resetSettings()` Sets all draw properties to the default value and resets view.
`void`	`resetView()` Resets view settings of the active cell including rotation, zoom and shifting.
`void`	`reshape(javax.media.opengl.GLAutoDrawable glAutoDrawable, int x, int y, int width, int height)` Called by the drawable during the first repaint after the component has been resized.
`void`	`rotate(double rx, double ry, double rz)` Sets the given rotation factor in the active cell or in every cells in case of synchronous mode.
`void`	`rotateTo(float[] rm)` Sets the matrix of rotation explicitly in the active cell or in every cells in case of synchronous mode.
`void`	`setActiveCell(int i)` Sets the ith cell to be the active cell of the scene.
`void`	`setAntialias(boolean state)` Enables/disables full scene anti-aliasing.
`void`	`setBackgroundColor(java.awt.Color newColor)` Sets the background color of the scene and an alpha value of 0 (transparent background).
`void`	`setBackgroundColor(float[] newColor)`
`void`	`setBounds(int x, int y, int width, int height)` Moves and resizes this component.
`void`	`setCellDrawProperty(int cellIndex, java.lang.String propertyName, java.lang.String propertyValue)` Sets the given draw property to the given cell.
`void`	`setDrawProperty(java.util.Properties properties)` Sets the given draw properties to the entire scene.
`void`	`setDrawProperty(java.lang.String propertyName, java.lang.String propertyValue)` Sets the draw property for all cells.
`void`	`setDrawProperty(java.lang.String propertyName, java.lang.String propertyValue, int range)` Sets the draw property either to the entire scene or to the active cell.
`void`	`setDropTarget(java.awt.dnd.DropTargetListener dl)` Sets the `DropTarget` of the graphic canvas.
`void`	`setMotionMode(int mode)` Notifies every cell of moving and standing modes.
`void`	`setNearEdgeTolerance(int tolerance)` Sets a border near the boundary of the cells in which mouse handling can work other way.
`void`	`setProgressBar(chemaxon.marvin.space.gui.JMSpaceProgressBar progressBar)`
`void`	`setSceneSize(int rowCount, int columnCount)` Sets the number of rows and columns.
`void`	`setSize(int sizex, int sizey)` Sets the physical size of the scene.
`void`	`setSmoothBackground(boolean b)` Enables/disables shaded background.
`void`	`setSynchronousMode(boolean state)` Sets handling of cells to synchronous/asynchronous.
`void`	`setTransformationCenter(float[] c)` Sets the transformation center explicitly to the given value.
`void`	`setTransformationCenter(chemaxon.marvin.space.UOID id)` Sets the center of transformation of the active cell to the coordinates of the named component.
`void`	`setTransparentBackground(boolean b)` Enables/disables transparent background color.
`void`	`setVerbose(boolean flag)` Sets the verbose level on/off.
`void`	`setVerbose(int level)` Sets the verbose level to the given level.
`void`	`shift(double shiftx, double shifty)` Sets the given shift factor in the active cell or in every cells in case of synchronous mode.
`void`	`shiftAnimated(double shiftx, double shifty, int n)` Sets the given shift factor dividing by n parts.
`void`	`showAllComponents()` Sets all invisible component of the active cell to visible.
`void`	`showAllComponents(java.lang.Class c)` Sets all components of the given class in the active cell to be visible.
`void`	`showAllMonitors()` Sets all monitor component of the active cell to visible.
`void`	`showFaded()` Sets the drawing mode of all faded elements back to the original drawing mode.
`void`	`zoom(double factor)` Sets the given zoom factor in the active cell or in every cells in case of synchronous mode.
`void`	`zoomAnimated(double f, int n)` Sets the given zoom factor dividing by n parts.

Methods inherited from class javax.swing.JPanel
getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent
addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - MSPACE_CONFIG_DEFAULT_PATH
```
public static final java.lang.String MSPACE_CONFIG_DEFAULT_PATH
```
    See Also:
    
    Constant Field Values
  - GLInfo
```
public static java.lang.String GLInfo
```
  - MODE_STANDING
```
public static final int MODE_STANDING
```
    See Also:
    
    Constant Field Values
  - MODE_MOVING
```
public static final int MODE_MOVING
```
    See Also:
    
    Constant Field Values
  - VERBOSE_LEVEL_NONE
```
public static final int VERBOSE_LEVEL_NONE
```
    See Also:
    
    Constant Field Values
  - VERBOSE_LEVEL_BASIC
```
public static final int VERBOSE_LEVEL_BASIC
```
    See Also:
    
    Constant Field Values
  - VERBOSE_LEVEL_DEVEL
```
public static final int VERBOSE_LEVEL_DEVEL
```
    See Also:
    
    Constant Field Values
  - SCENE_RANGE
```
public static final int SCENE_RANGE
```
    See Also:
    
    Constant Field Values
  - CELL_RANGE
```
public static final int CELL_RANGE
```
    See Also:
    
    Constant Field Values
  - COMPONENT_RANGE
```
public static final int COMPONENT_RANGE
```
    See Also:
    
    Constant Field Values
- Constructor Detail
  - GraphicScene
```
public GraphicScene()
             throws java.lang.Exception
```
    Creates a hardware accelerated and double buffered GraphicScene. It has one cell.
    
    Throws:
    
    java.lang.Exception
  - GraphicScene
```
public GraphicScene(int rowCount,
                    int columnCount)
             throws java.lang.Exception
```
    Creates a hardware accelerated and double buffered GraphicScene. It will have the given number of rows and columns, that is rowCount * columnCount cells.
    
    Parameters:
    
    rowCount - number of rows of cells
    
    columnCount - number of columns of cells
    
    Throws:
    
    java.lang.Exception
- Method Detail
  - printProperties
```
public static void printProperties()
```
  - setProgressBar
```
public void setProgressBar(chemaxon.marvin.space.gui.JMSpaceProgressBar progressBar)
```
  - isVerbose
```
public boolean isVerbose()
```
    Gets the verbose level. The level of verboseness will not be returned. See also getVerboseLevel().
    
    Returns:
    
    verbose is enabled or not
  - getVerboseLevel
```
public int getVerboseLevel()
```
    Gets the verbose level. See VERBOSE_LEVEL_NONE, VERBOSE_LEVEL_BASIC, VERBOSE_LEVEL_DEVEL.
    
    Returns:
    
    level of verboseness
  - setVerbose
```
public void setVerbose(boolean flag)
```
    Sets the verbose level on/off. The level of verboseness will be basic. See also setVerbose(int level).
  - setVerbose
```
public void setVerbose(int level)
```
    Sets the verbose level to the given level. See VERBOSE_LEVEL_NONE, VERBOSE_LEVEL_BASIC, VERBOSE_LEVEL_DEVEL.
    
    Parameters:
    
    level - level of verboseness
  - setDropTarget
```
public void setDropTarget(java.awt.dnd.DropTargetListener dl)
```
    Sets the DropTarget of the graphic canvas.
    
    Parameters:
    
    dl -
  - processAwtEvent
```
public void processAwtEvent(java.awt.AWTEvent evt,
                            java.lang.String evtID,
                            java.lang.String evtValue)
```
    The given awt event will go to the queue of events, and will be performed during the next draw.
    
    Parameters:
    
    evt - AWTEvent to process
    
    evtID - identifier of the event
    
    evtValue - value of the event or empty String
  - processEvent
```
public void processEvent(java.lang.String evtID,
                         java.lang.String evtValue)
```
    The given event will go to the queue of events, and will be performed during the next draw. These can be specific options, or draw properties with entire scene as range.
    
    Parameters:
    
    evtID - identifier of the event
    
    evtValue - value of the event
  - processCellEvent
```
public void processCellEvent(java.lang.String evtID,
                             java.lang.String evtValue)
```
    The given event will go to the queue of events, and will be performed during the next draw. These draw properties will have effect only in the active cell.
    
    Parameters:
    
    evtID - identifier of the event
    
    evtValue - value of the event
  - processComponentEvent
```
public void processComponentEvent(java.lang.Object component,
                                  java.lang.String evtID,
                                  java.lang.String evtValue)
```
    The given event will go to the queue of events, and will be performed during the next draw. These draw properties will have effect only on the given object. These events are mainly coming from the selection panel.
    
    Parameters:
    
    component - range of event
    
    evtID - identifier of the event
    
    evtValue - value of the event
  - getEventHandler
```
public chemaxon.marvin.space.MSpaceEventHandler getEventHandler()
```
    Returns the event handler of the scene.
    
    Returns:
    
    handler that processes events being in the queue
  - setMotionMode
```
public void setMotionMode(int mode)
```
    Notifies every cell of moving and standing modes. This is useful when a component uses a time consuming computation that can be delayed to the non-interactive mode.
    
    Parameters:
    
    mode - see MODE_MOVING, MODE_STANDING
  - setSynchronousMode
```
public void setSynchronousMode(boolean state)
```
    Sets handling of cells to synchronous/asynchronous. Cell events will be passed based on this, i.e in synchronous mode every cell will get the cell-range events and only the active cell will get it in asynchronous mode.
    
    Parameters:
    
    state - synchronous mode is enabled or not
  - measureFrameRate
```
public void measureFrameRate()
```
    Measures frame rate of drawing. It is required for auto-scaled rendering quality. We use frame rate instead of FPS, because frame rate is linear while FPS is not.
  - getViewportWidth
```
public int getViewportWidth()
```
    Returns the phisical width of the viewport.
    
    Returns:
    
    width in pixels
  - getViewportHeight
```
public int getViewportHeight()
```
    Returns the phisical height of the viewport.
    
    Returns:
    
    height in pixels
  - setSceneSize
```
public void setSceneSize(int rowCount,
                         int columnCount)
                  throws java.lang.Exception
```
    Sets the number of rows and columns.
    
    Parameters:
    
    rowCount - number of rows, must be greater than 0
    
    columnCount - number of columns, must be greater than 0
    
    Throws:
    
    java.lang.Exception - on initialization failure
  - createNewCell
```
public void createNewCell()
                   throws java.lang.Exception
```
    Sets an empty cell to be the active cell. Adds new row or column if necessary.
    
    Throws:
    
    java.lang.Exception
  - setBounds
```
public void setBounds(int x,
                      int y,
                      int width,
                      int height)
```
    Moves and resizes this component. The new location of the top-left corner is specified by x and y, and the new size is specified by width and height.
    
    Overrides:
    
    setBounds in class java.awt.Component
    
    Parameters:
    
    x - the new x-coordinate of this component
    
    y - the new y-coordinate of this component
    
    width - the new width of this component
    
    height - the new height of this component
  - setSize
```
public void setSize(int sizex,
                    int sizey)
```
    Sets the physical size of the scene.
    
    Overrides:
    
    setSize in class java.awt.Component
    
    Parameters:
    
    sizex - width in pixels
    
    sizey - height in pixels
  - setNearEdgeTolerance
```
public void setNearEdgeTolerance(int tolerance)
```
    Sets a border near the boundary of the cells in which mouse handling can work other way.
    
    Parameters:
    
    tolerance - in pixels
  - getCellTop
```
public int getCellTop()
```
    Returns the y coordinate of the top of the active cell.
    
    Returns:
    
    greatest y coordinate in pixels
  - getCellButtom
```
public int getCellButtom()
```
    Returns the y coordinate of the buttom of the active cell in pixels.
    
    Returns:
    
    lowest y coordinate in pixels
  - getCellLeft
```
public int getCellLeft()
```
    Returns the x coordinate of the left edge of the active cell.
    
    Returns:
    
    lowest x coordinate in pixels
  - getCellRight
```
public int getCellRight()
```
    Returns the x coordinate of the right edge of the active cell.
    
    Returns:
    
    greatest x coordinate in pixels
  - getCellWidth
```
public int getCellWidth()
```
    Returns the width of the cells. Note that cells have uniform size.
    
    Returns:
    
    width of cells in pixels
  - getCellHeight
```
public int getCellHeight()
```
    Returns the height of the cells. Note that cells have uniform size.
    
    Returns:
    
    heigth of cells in pixels
  - getRowCount
```
public int getRowCount()
```
    Returns the number of rows in the scene.
    
    Returns:
    
    number of rows
  - getColumnCount
```
public int getColumnCount()
```
    Returns the number of columns in the scene.
    
    Returns:
    
    number of columns
  - getCellCount
```
public int getCellCount()
```
    Returns the number of cells in the scene.
    
    Returns:
    
    number of cells
  - getGraphicComponentCount
```
public int getGraphicComponentCount()
```
    Returns the total number of GraphicComponents in the cells.
    
    Returns:
    
    summary of components in all cells
  - removePharmacophorePoint
```
public PharmacophorePoint removePharmacophorePoint(ComponentElement ce)
```
  - addComponent
```
public boolean addComponent(GraphicComponent component)
                     throws java.lang.Exception
```
    Adds a component to the active or to the first cell. Has the component process the global drawing properties.
    
    Parameters:
    
    component - to add
    
    Returns:
    
    adding component succeeded or not // * @throws MSpaceException when scene is not properly initialized
    
    Throws:
    
    java.lang.Exception
  - addComponentToEmptyCell
```
public boolean addComponentToEmptyCell(GraphicComponent gc)
                                throws java.lang.Exception
```
    Adds a component to an empty cell. Has the component process the global drawing properties.
    
    Parameters:
    
    gc - component to add
    
    Returns:
    
    adding component succeeded or not // * @throws MSpaceException when scene is not properly initialized
    
    Throws:
    
    java.lang.Exception
  - addComponent
```
public boolean addComponent(GraphicComponent component,
                            int cellIndex)
                     throws java.lang.Exception
```
    Adds a component to the cell having the given index. Has the component process the global drawing properties.
    
    Parameters:
    
    component - to add
    
    cellIndex - internal index of the cell
    
    Returns:
    
    adding component succeeded or not
    
    Throws:
    
    java.lang.Exception
  - addCoordinateSystem
```
public chemaxon.marvin.space.CoordinateComponent addCoordinateSystem(int cellIndex)
                                                              throws java.lang.Exception
```
    Adds a dummy graphic component that represents the coordinate system.
    
    Parameters:
    
    cellIndex - internal index of the cell
    
    Throws:
    
    java.lang.Exception
  - removeSelectedComponents
```
public void removeSelectedComponents()
```
    Removes all selected components from the active cell with all related components (connected monitors, surface of a molecule). If a component is partly selected, it will not be deleted.
  - removeUnselectedComponents
```
public void removeUnselectedComponents()
```
    Removes all unselected components from the active cell with all related components (connected monitors, surface of a molecule). If a component is not entirely selected, it will not be deleted.
  - removeUnselectedMonitors
```
public void removeUnselectedMonitors()
```
    Removes all unselected monitor component from the scene.
  - removeAllComponents
```
public void removeAllComponents()
```
    Removes all component from the scene and clears the selection panel.
  - removeAllComponents
```
public void removeAllComponents(java.lang.Class c)
```
    Removes all component from the scene and clears the selection panel.
  - removeComponent
```
public void removeComponent(GraphicComponent component)
```
    Removes a component from the scene.
    
    Parameters:
    
    component - to remove
  - removeComponent
```
public void removeComponent(chemaxon.marvin.space.UOID componentId)
```
    Removes a component from the scene.
    
    Parameters:
    
    componentId - identifier of the component to remove
  - containsComponent
```
public boolean containsComponent(GraphicComponent gc)
```
    Returns true if the component exists in the scene.
    
    Returns:
    
    valid component or not
  - setActiveCell
```
public void setActiveCell(int i)
```
    Sets the ith cell to be the active cell of the scene.
    
    Parameters:
    
    i - internal index of the cell
  - deactivateActiveCell
```
public void deactivateActiveCell()
```
    Sets the active cell to be no longer active.
  - getCell
```
public GraphicCell getCell(int cellIndex)
```
    Returns the GraphicCell which has the given index.
    
    Parameters:
    
    cellIndex - internal index of the cell
    
    Returns:
    
    the required cell
  - getActiveCellIndex
```
public int getActiveCellIndex()
```
    Returns the index of the active cell.
    
    Returns:
    
    internal index
  - getActiveCell
```
public GraphicCell getActiveCell()
```
    Returns the active cell of the scene.
    
    Returns:
    
    the cell
  - isActiveCell
```
public boolean isActiveCell(int cellIndex)
```
    Returns true if the cell having cellIndex is the active cell of the scene.
    
    Parameters:
    
    cellIndex - internal index of the cell
    
    Returns:
    
    is active or not
  - hasSelectedComponent
```
public boolean hasSelectedComponent()
```
    Returns true if there is at least 1 selected component in the active cell.
    
    Returns:
    
    is there any selected component
  - hasSelectedComponentElement
```
public boolean hasSelectedComponentElement()
```
    Returns true if there is at least 1 selected ComponentElement in the active cell.
    
    Returns:
    
    is there any selected elements
  - getGraphicComponent
```
public GraphicComponent getGraphicComponent(int componentIndex)
```
    Returns the GraphicComponent having the given index in the active cell.
    
    Parameters:
    
    componentIndex - internal index of the component
    
    Returns:
    
    component having given index or null
  - getGraphicComponent
```
public GraphicComponent getGraphicComponent(int cellIndex,
                                            int componentIndex)
```
    Returns the GraphicComponent of the given cell.
    
    Parameters:
    
    componentIndex - internal index of the component
    
    cellIndex - internal index of the cell
    
    Returns:
    
    component having given index or null
  - getGraphicComponent
```
public GraphicComponent getGraphicComponent(chemaxon.marvin.space.UOID id)
```
    Returns the GraphicComponent with the given id.
  - hideSelectedComponents
```
public void hideSelectedComponents()
```
    Hides all selected components from the active cell with all related components (connected monitors, surface of a molecule). If a component is partly selected, it will not be hidden.
  - hideUnselectedComponents
```
public void hideUnselectedComponents()
```
    Hides all unselected components from the active cell with all related components (connected monitors, surface of a molecule). If a component is not entirely selected, it will not be hidden.
  - fadeSelectedComponents
```
public void fadeSelectedComponents()
```
    Sets the drawing mode of all selected elements to faded so it will be hardly visible, and prevents them from clicking. Note that each decendants of GraphicComponent should implement this behaviour to take affect.
  - fadeUnselectedComponents
```
public void fadeUnselectedComponents()
```
    Sets the drawing mode of all unselected elements to faded so it will be hardly visible, and prevents them from clicking. Note that each decendants of GraphicComponent should implement this behaviour to take affect.
  - showAllComponents
```
public void showAllComponents()
```
    Sets all invisible component of the active cell to visible.
  - showFaded
```
public void showFaded()
```
    Sets the drawing mode of all faded elements back to the original drawing mode. Note that each decendants of GraphicComponent should implement this behaviour to take affect.
  - hideAllMonitors
```
public void hideAllMonitors()
```
    Sets all monitor component of the active cell to invisible.
  - showAllMonitors
```
public void showAllMonitors()
```
    Sets all monitor component of the active cell to visible.
  - showAllComponents
```
public void showAllComponents(java.lang.Class c)
```
    Sets all components of the given class in the active cell to be visible.
  - hideAllComponents
```
public void hideAllComponents(java.lang.Class c)
```
    Sets all components of the given class in the active cell to be invisible.
  - getAllComponents
```
public java.util.ArrayList getAllComponents(java.lang.Class c)
```
  - getDrawProperty
```
public java.lang.String getDrawProperty(java.lang.String name)
```
    Returns the draw property of the scene or null if the property is not defined.
    
    Parameters:
    
    name - identifier of the property
    
    Returns:
    
    value of the property as String
  - getCellDrawProperty
```
public java.lang.String getCellDrawProperty(java.lang.String name)
```
    Returns the draw property from the active cell or null if there is no active cell or the property is not defined in the active cell.
    
    Parameters:
    
    name - the name of the draw property
    
    Returns:
    
    value of the property as String
  - getCellDrawProperty
```
public java.lang.String getCellDrawProperty(int cellIdx,
                                            java.lang.String name)
```
    Returns the draw property from the given cell or null if not defined.
    
    Parameters:
    
    cellIdx - internal index of the cell.
    
    name - the name of the draw property
  - setCellDrawProperty
```
public void setCellDrawProperty(int cellIndex,
                                java.lang.String propertyName,
                                java.lang.String propertyValue)
                         throws java.lang.Exception
```
    Sets the given draw property to the given cell.
    
    Parameters:
    
    cellIndex - internal index of the cell.
    
    propertyName - the name of the draw property
    
    propertyValue - the value of the property
    
    Throws:
    
    java.lang.Exception
  - setDrawProperty
```
public void setDrawProperty(java.util.Properties properties)
                     throws java.lang.Exception
```
    Sets the given draw properties to the entire scene.
    
    Parameters:
    
    properties - set of draw properties
    
    Throws:
    
    java.lang.Exception
  - setDrawProperty
```
public void setDrawProperty(java.lang.String propertyName,
                            java.lang.String propertyValue)
                     throws java.lang.Exception
```
    Sets the draw property for all cells. These properties are stored in this class in order to pass them to newly created cells.
    
    Throws:
    
    java.lang.Exception
  - setDrawProperty
```
public void setDrawProperty(java.lang.String propertyName,
                            java.lang.String propertyValue,
                            int range)
                     throws java.lang.Exception
```
    Sets the draw property either to the entire scene or to the active cell.
    
    Parameters:
    
    propertyName - the name of the draw property
    
    propertyValue - the value of the property
    
    range - SCENE_RANGE, CELL_RANGE
    
    Throws:
    
    java.lang.Exception
  - resetSettings
```
public void resetSettings()
                   throws java.lang.Exception
```
    Sets all draw properties to the default value and resets view.
    
    Throws:
    
    java.lang.Exception
  - resetView
```
public void resetView()
```
    Resets view settings of the active cell including rotation, zoom and shifting. Takes effect at the next redraw because of threading issues.
  - resetAll
```
public void resetAll()
```
    Resets view settings of all cells including rotation, zoom and shifting. Takes effect at the next redraw because of threading issues.
  - setAntialias
```
public void setAntialias(boolean state)
```
    Enables/disables full scene anti-aliasing.
    
    Parameters:
    
    state - the required state of anti-aliasing
  - isAntialiasEnabled
```
public boolean isAntialiasEnabled()
```
    Returns true if full-screen antialias is enabled. Note, that on mouse drag event antialias is/should be automatically disabled.
    
    Returns:
    
    state of anti/aliasing
  - getBackgroundColor
```
public java.awt.Color getBackgroundColor()
```
    Returns the background color of the scene.
    
    Returns:
    
    color as java.awt.Color
  - getBackgroundColorF
```
public float[] getBackgroundColorF()
```
  - setBackgroundColor
```
public void setBackgroundColor(java.awt.Color newColor)
```
    Sets the background color of the scene and an alpha value of 0 (transparent background).
    
    Parameters:
    
    newColor - color as java.awt.Color
  - setBackgroundColor
```
public void setBackgroundColor(float[] newColor)
```
  - isTransparentBackgroundEnabled
```
public boolean isTransparentBackgroundEnabled()
```
    Returns true if the background is transparent. Note the alpha value of the background color can be 0 or 1 that means totally opaque or totally transparent.
    
    Returns:
    
    the background color is totally transparent or totally opaque
  - setTransparentBackground
```
public void setTransparentBackground(boolean b)
```
    Enables/disables transparent background color. The difference cannot be seen on the canvas, but it is an important property of saving images.
    
    Parameters:
    
    b -
  - isSmoothBackgroundEnabled
```
public boolean isSmoothBackgroundEnabled()
```
    Returns true if the background is enabled to be smooth, so that it does not have a homogenous color.
    
    Returns:
    
    the background is homogenous or shaded
  - setSmoothBackground
```
public void setSmoothBackground(boolean b)
```
    Enables/disables shaded background.
    
    Parameters:
    
    b -
  - reshape
```
public void reshape(javax.media.opengl.GLAutoDrawable glAutoDrawable,
                    int x,
                    int y,
                    int width,
                    int height)
```
    Called by the drawable during the first repaint after the component has been resized. The client can update the viewport and view volume of the window appropriately, for example by a call to GL2.glViewport(int, int, int, int);. Note that for convenience the component has already called GL2.glViewport(int, int, int, int)(x, y, width, height) when this method is called, so the client may not have to do anything in this method.
    
    Specified by:
    
    reshape in interface javax.media.opengl.GLEventListener
    
    Parameters:
    
    glAutoDrawable - The GLDrawable object.
    
    x - The X Coordinate of the viewport rectangle.
    
    y - The Y coordinate of the viewport rectangle.
    
    width - The new width of the window.
    
    height - The new height of the window.
  - displayChanged
```
public void displayChanged(javax.media.opengl.GLAutoDrawable glAutoDrawable,
                           boolean b,
                           boolean b1)
                    throws java.lang.Exception
```
    Called by the system.
    
    Throws:
    
    java.lang.Exception
  - isGLInitialized
```
public boolean isGLInitialized()
```
    Returns true if the OpenGL2 canvas is already initialized. It is to prevent too early gl-related calls such as setSceneSize in applets.
  - getGL
```
public javax.media.opengl.GL2 getGL()
```
    Returns the OpenGL2 interface.
  - getGLAutoDrawable
```
public javax.media.opengl.GLAutoDrawable getGLAutoDrawable()
```
    Returns the GLAutoDrawable object.
  - getGLCanvas
```
public java.awt.Component getGLCanvas()
```
    Returns the GL2 canvas.
  - getGLInfo
```
public java.lang.String getGLInfo(boolean extended)
```
    Returns the OpenGL2 Renderer, Version, and Vendor and Extensions in VERBOSE_LEVEL_DEVEL mode.
    
    Parameters:
    
    extended - the available extensions are to returned or not
    
    Returns:
    
    info as String
  - addListToDelete
```
public void addListToDelete(int list)
```
    Adds a gl list id to the deletion list
    
    Parameters:
    
    list - gl list id
  - init
```
public void init(javax.media.opengl.GLAutoDrawable glAutoDrawable)
```
    Called by the drawable immediately after the OpenGL2 context is initialized for the first time. Can be used to perform one-time OpenGL2 initialization such as setup of lights and display lists.
    
    Specified by:
    
    init in interface javax.media.opengl.GLEventListener
    
    Parameters:
    
    glAutoDrawable - The GLAutoDrawable object.
  - display
```
public void display(javax.media.opengl.GLAutoDrawable glAutoDrawable)
```
    Warning: this function should not be called directly, use refresh() or redraw() instead. Draws every cell of the scene. The result depends on the cells. Called by the drawable to initiate OpenGL2 rendering by the client. After all GLEventListeners have been notified of a display event, the drawable will swap its buffers if necessary.
    
    Specified by:
    
    display in interface javax.media.opengl.GLEventListener
    
    Parameters:
    
    glAutoDrawable - The GLAutoDrawable object.
  - refresh
```
public void refresh()
```
  - redraw
```
public void redraw()
```
    Redraws the entire scene.
  - paint
```
public void paint(java.awt.Graphics g)
```
    Overrides:
    
    paint in class javax.swing.JComponent
  - getBufferedImage
```
public java.awt.image.BufferedImage getBufferedImage()
```
    Returns the Canvas as a BufferedImage with the same size in pixels. Can be saved as a picture.
  - createImage
```
public int createImage(java.nio.Buffer buf,
                       int imageWidth,
                       int imageHeight)
```
  - activateContainerCell
```
public void activateContainerCell(GraphicComponent component)
```
    The containing cell of the GraphicComponent will be the active cell of the scene.
  - locateObject
```
public chemaxon.marvin.space.UOID locateObject(int x,
                                               int y)
```
    Returns the identifire of the object under x,y position. Returns a cell id if location is not in the active cell.
    
    Parameters:
    
    x - coordinate in pixels
    
    y - coordinate in pixels
  - locateObject
```
public chemaxon.marvin.space.UOID locateObject(int x,
                                               int y,
                                               java.lang.Class componentClass)
```
    Returns the identifire of the given class object under x,y position. Returns a cell id if location is not in the active cell.
    
    Parameters:
    
    x - coordinate in pixels
    
    y - coordinate in pixels
    
    componentClass - components of other classes will be ignored in location
    
    Since:
    
    Marvin 4.0.3
  - locateCellId
```
public chemaxon.marvin.space.UOID locateCellId(int x,
                                               int y)
```
    Returns the id of the cell under x, y position.
    
    Parameters:
    
    x - coordinate in pixels
    
    y - coordinate in pixels
  - locateCell
```
public int locateCell(int x,
                      int y)
```
    Returns the internal index of the cell under x,y position.
    
    Parameters:
    
    x - window coordinate
    
    y - window coordinate
  - getControllableObject
```
public GraphicComponent getControllableObject(java.lang.String type)
```
    Returns a selected component from the active cell what can be controlled by the given tye controller.
    
    Parameters:
    
    type - identifier of the type of the controller, "Shift", "Rotate", "Resize"
    
    Returns:
    
    controllable component or null
  - locationNearEdgeX
```
public boolean locationNearEdgeX(int x,
                                 int y)
```
    Tells whether the given location is near the vertical edges of any cell.
    
    Parameters:
    
    x - horizontal mouse location in absolute window coordinate
    
    y - vertical mouse location in absolute window coordinate
    
    Returns:
    
    result of location
  - locationNearEdgeY
```
public boolean locationNearEdgeY(int x,
                                 int y)
```
    Tells whether the given location is near the horizontal edges of any cell.
    
    Parameters:
    
    x - horizontal mouse location in absolute window coordinate
    
    y - vertical mouse location in absolute window coordinate
    
    Returns:
    
    result of location
  - locationNearEdge
```
public boolean locationNearEdge(int x,
                                int y)
```
    Tells whether the given location is near to any edges of any cell.
    
    Parameters:
    
    x - horizontal mouse location in absolute window coordinate
    
    y - vertical mouse location in absolute window coordinate
    
    Returns:
    
    result of location
  - clearSelection
```
public void clearSelection(int index)
```
    Sets all components and parts of components to be unselected in the given cell.
    
    Parameters:
    
    index - internal index of the cell
  - exclusiveSelection
```
public void exclusiveSelection(chemaxon.marvin.space.UOID id)
```
    Exclusive selection in the given component in its container cell. The previously picked part of the component will be selected, and all selected components and parts of components will be unselected.
    
    Parameters:
    
    id - identifier of the component
  - extendSelection
```
public void extendSelection(chemaxon.marvin.space.UOID id)
```
    Additive selection in the given component in its container cell. The previously picked part of the component will be selected, and all selection remains as is.
    
    Parameters:
    
    id - identifier of the component
  - invertSelection
```
public void invertSelection(chemaxon.marvin.space.UOID id)
```
    The previously picked part of the component will be selected if it was unselected and vice versa. All other selection remains as is.
    
    Parameters:
    
    id - identifier of the component
  - componentBecameSelected
```
public boolean componentBecameSelected(int cellIdx)
```
    Returns true if a component became selected previously in the given cell. Information from a selection is kept up to this query.
    
    Parameters:
    
    cellIdx - internal index of the cell
    
    Returns:
    
    flag indicating if selection occured or not
  - componentBecameUnselected
```
public boolean componentBecameUnselected(int cellIdx)
```
    Returns true if a component became unselected previously in the given cell. Information from an unselection is kept up to this query.
    
    Parameters:
    
    cellIdx - internal index of the cell
    
    Returns:
    
    flag indicating if unselection occured or not
  - getTransformationCenter
```
public float[] getTransformationCenter()
```
    Returns the center of transformation of the active cell or null if there is no active cell.
    
    Returns:
    
    coordinates in the model space
  - getShiftX
```
public double getShiftX(int cellIndex)
```
    Returns corrected shifting value of the given cell.
    
    Parameters:
    
    cellIndex -
    
    Returns:
    
    x coordinate in world coordinates
  - getShiftY
```
public double getShiftY(int cellIndex)
```
    Returns corrected shifting value of the given cell.
    
    Parameters:
    
    cellIndex -
    
    Returns:
    
    y coordinate in world coordinates
  - setTransformationCenter
```
public void setTransformationCenter(chemaxon.marvin.space.UOID id)
```
    Sets the center of transformation of the active cell to the coordinates of the named component. The actual coordinates are got by the GraphicComponent.getCoordinates(float[]) method
    
    Parameters:
    
    id - identifier of the component
  - setTransformationCenter
```
public void setTransformationCenter(float[] c)
```
    Sets the transformation center explicitly to the given value. It will affect the active cell or all cells in case of synchronous mode.
    
    Parameters:
    
    c - exact coordinates to be set
  - zoom
```
public void zoom(double factor)
```
    Sets the given zoom factor in the active cell or in every cells in case of synchronous mode.
    
    Parameters:
    
    factor - zooming factor, usually it is the changing of the mouse coordinates in pixels
  - zoomAnimated
```
public void zoomAnimated(double f,
                         int n)
```
    Sets the given zoom factor dividing by n parts. Every part of zoom is followed by a refresh() event.
    
    Parameters:
    
    f - zoom factor
    
    n - number of zoom effects and refreshes
  - rotate
```
public void rotate(double rx,
                   double ry,
                   double rz)
```
    Sets the given rotation factor in the active cell or in every cells in case of synchronous mode.
    
    Parameters:
    
    rx - rotation angle around the x axis
    
    ry - rotation angle around the y axis
    
    rz - rotation angle around the z axis
  - rotateTo
```
public void rotateTo(float[] rm)
```
    Sets the matrix of rotation explicitly in the active cell or in every cells in case of synchronous mode.
    
    Parameters:
    
    rm - 4x4 matrix of rotation
  - shift
```
public void shift(double shiftx,
                  double shifty)
```
    Sets the given shift factor in the active cell or in every cells in case of synchronous mode.
    
    Parameters:
    
    shiftx - translation along x axis in window coordinates
    
    shifty - translation along y axis in window coordinates
  - shiftAnimated
```
public void shiftAnimated(double shiftx,
                          double shifty,
                          int n)
```
    Sets the given shift factor dividing by n parts. Every part of shift is followed by a refresh() event.
    
    Parameters:
    
    shiftx - translation along x axis in window coordinates
    
    shifty - translation along y axis in window coordinates
    
    n - number of shift effects and refreshes
  - dispose
```
public void dispose(javax.media.opengl.GLAutoDrawable glad)
```
    Specified by:
    
    dispose in interface javax.media.opengl.GLEventListener
  - callback
```
public java.lang.Object callback(java.lang.String eventID,
                                 java.lang.Object value)
```
    Specified by:
    
    callback in interface chemaxon.marvin.util.CallbackIface

Class GraphicScene

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class javax.swing.JComponent

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Constructor Summary

Method Summary

Methods inherited from class javax.swing.JPanel

Methods inherited from class javax.swing.JComponent

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Field Detail

MSPACE_CONFIG_DEFAULT_PATH

GLInfo

MODE_STANDING

MODE_MOVING

VERBOSE_LEVEL_NONE

VERBOSE_LEVEL_BASIC

VERBOSE_LEVEL_DEVEL

SCENE_RANGE

CELL_RANGE

COMPONENT_RANGE

Constructor Detail

GraphicScene

GraphicScene

Method Detail

printProperties

setProgressBar

isVerbose

getVerboseLevel

setVerbose

setVerbose

setDropTarget

processAwtEvent

processEvent

processCellEvent

processComponentEvent

getEventHandler

setMotionMode

setSynchronousMode

measureFrameRate

getViewportWidth

getViewportHeight

setSceneSize

createNewCell

setBounds

setSize

setNearEdgeTolerance

getCellTop

getCellButtom

getCellLeft

getCellRight

getCellWidth

getCellHeight

getRowCount

getColumnCount

getCellCount

getGraphicComponentCount

removePharmacophorePoint

addComponent

addComponentToEmptyCell

addComponent

addCoordinateSystem

removeSelectedComponents

removeUnselectedComponents

removeUnselectedMonitors

removeAllComponents

removeAllComponents

removeComponent

removeComponent

containsComponent

setActiveCell

deactivateActiveCell

getCell