All Known Implementing Classes:

MoleculeComponent

Enclosing class:

MacroMoleculeComponent
```
public static interface MacroMoleculeComponent.MoleculeVisualizer
```

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method	Description
`void`	`draw()`
`void`	`drawAtomSelection(int mode)`
`void`	`drawTransparentPart()`
`void`	`fadeSelected()`
`void`	`fadeUnselected()`
`BoundingBox`	`getBoundingBox()`
`Color`	`getColor()`
`float[]`	`getColorF()`
`int`	`getColorType()`
`String`	`getDescription(ComponentElement ce)`
`String`	`getDrawProperty(String propertyName)`
`ComponentElement[]`	`getLabelInformation(String labelType)`
`MacroMoleculeComponent`	`getMacroMoleculeComponent()`
`Molecule`	`getMolecule()`
`String`	`getName()`
`int`	`getVisibleAtomCount()`
`boolean`	`hasTransparentPart()`
`void`	`hideSelected()`
`void`	`hideUnselected()`
`void`	`initDraw()`
`boolean`	`isAtomFaded(int i)`
`boolean`	`isAtomVisible(int i)`
`boolean`	`isHighlighted()`
`boolean`	`isSelected()`
`boolean`	`isSelectedAtom(int i)`
`boolean`	`isVisible()`
`void`	`onRemove()`
`void`	`reCreate()`
`void`	`select()`
`void`	`selectAtom(int i)`
`void`	`selectComponentElementsInside(BoundingBox bb)`
`int`	`selectedAtomCount()`
`void`	`setDrawProperty(String propertyName, String propertyValue)`
`void`	`setGL(javax.media.opengl.GL2 gl, javax.media.opengl.glu.GLU glu)`
`void`	`setHighlighted(boolean v)`
`void`	`setVisible(boolean v)`
`void`	`showFaded()`
`void`	`unSelect()`
`void`	`unSelectAtom(int i)`

Method Detail

getMacroMoleculeComponent

MacroMoleculeComponent getMacroMoleculeComponent()

onRemove
```
void onRemove()
```

getName
```
String getName()
```

initDraw
```
void initDraw()
```

hasTransparentPart
```
boolean hasTransparentPart()
```

drawTransparentPart
```
void drawTransparentPart()
```

draw
```
void draw()
```

selectAtom
```
void selectAtom(int i)
```

unSelectAtom
```
void unSelectAtom(int i)
```

isSelectedAtom
```
boolean isSelectedAtom(int i)
```

selectedAtomCount
```
int selectedAtomCount()
```

getDescription

String getDescription(ComponentElement ce)

getLabelInformation

ComponentElement[] getLabelInformation(String labelType)

isSelected
```
boolean isSelected()
```

select
```
void select()
```

unSelect
```
void unSelect()
```

selectComponentElementsInside

void selectComponentElementsInside(BoundingBox bb)

drawAtomSelection
```
void drawAtomSelection(int mode)
```

setGL

void setGL(javax.media.opengl.GL2 gl,
           javax.media.opengl.glu.GLU glu)

isVisible
```
boolean isVisible()
```

setVisible
```
void setVisible(boolean v)
```

isAtomVisible
```
boolean isAtomVisible(int i)
```

isAtomFaded
```
boolean isAtomFaded(int i)
```

getVisibleAtomCount
```
int getVisibleAtomCount()
```

showFaded
```
void showFaded()
```

hideSelected
```
void hideSelected()
```

hideUnselected
```
void hideUnselected()
```

fadeSelected
```
void fadeSelected()
```

fadeUnselected
```
void fadeUnselected()
```

isHighlighted
```
boolean isHighlighted()
```

setHighlighted
```
void setHighlighted(boolean v)
```

getColor
```
Color getColor()
```

getColorF
```
float[] getColorF()
```

getColorType
```
int getColorType()
```

getBoundingBox
```
BoundingBox getBoundingBox()
```

getDrawProperty

String getDrawProperty(String propertyName)

setDrawProperty

void setDrawProperty(String propertyName,
                     String propertyValue)

reCreate
```
void reCreate()
```

getMolecule
```
Molecule getMolecule()
```

Interface MacroMoleculeComponent.MoleculeVisualizer

Method Summary

Method Detail

getMacroMoleculeComponent

onRemove

getName

initDraw

hasTransparentPart

drawTransparentPart

draw

selectAtom

unSelectAtom

isSelectedAtom

selectedAtomCount

getDescription

getLabelInformation

isSelected

select

unSelect

selectComponentElementsInside

drawAtomSelection

setGL

isVisible

setVisible

isAtomVisible

isAtomFaded

getVisibleAtomCount

showFaded

hideSelected

hideUnselected

fadeSelected

fadeUnselected

isHighlighted

setHighlighted

getColor

getColorF

getColorType

getBoundingBox

getDrawProperty

setDrawProperty

reCreate

getMolecule