chemaxon.standardizer.actions

Class ClearStereoAction

java.lang.Object

chemaxon.standardizer.AbstractStandardizerAction

chemaxon.standardizer.actions.ClearStereoAction

All Implemented Interfaces:

chemaxon.license.Licensable, StandardizerAction, java.beans.PropertyChangeListener, java.lang.Cloneable, java.util.EventListener

@PublicAPI
public final class ClearStereoAction
extends AbstractStandardizerAction

Clear stereo standardizer action

Since:

5.11

Author:

Imre Barna

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	PROPERTY_KEY_CHIRALITY Key of type for property change of mode
static java.lang.String	PROPERTY_KEY_DOUBLE_BOND Key of type for property change of mode
static java.lang.String	PROPERTY_KEY_SINGLE_UP_OR_DOWN_BOND Key of type for property change of mode
static java.lang.String	TYPE_KEY Key of type for parsing

Fields inherited from class chemaxon.standardizer.AbstractStandardizerAction

CONFIG_PATH_KEY, FORMAT_KEY, ID_KEY, support

Constructor Summary

Constructors

Constructor and Description
ClearStereoAction(java.util.Map<java.lang.String,java.lang.String> params) Initializes the action with parameters

Method Summary

Modifier and Type	Method and Description
ClearStereoAction	clone()
java.lang.String	getType() Gets the type of the action as string.
boolean	isChirality() Gets the chirality value of absolute stereo action
boolean	isDoubleBond() Gets the double bond value of absolute stereo action
boolean	isSingleUpOrDownBond() Gets the single wedge value of absolute stereo action
void	setChirality(boolean chirality) Sets the chirality value of absolute stereo action
void	setDoubleBond(boolean doubleBond) Sets the double bond value of absolute stereo action
void	setSingleUpOrDownBond(boolean singleUpOrDownBond) Sets the single wedge value of absolute stereo action
protected Changes	standardize1(Molecule molecule) This method contains the current standardization mechanism.
java.lang.String	toString()

Methods inherited from class chemaxon.standardizer.AbstractStandardizerAction

addPropertyChangeListener, addPropertyChangeListener, cloneItem, getComponents, getDescriptor, getID, isActive, isAvailable, isLicensed, isValid, propertyChange, removePropertyChangeListener, removePropertyChangeListener, setActive, setID, setLicenseEnvironment, setValid, standardize

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

TYPE_KEY

public static final java.lang.String TYPE_KEY

Key of type for parsing

See Also:

Constant Field Values

PROPERTY_KEY_CHIRALITY

public static final java.lang.String PROPERTY_KEY_CHIRALITY

Key of type for property change of mode

See Also:

Constant Field Values

PROPERTY_KEY_DOUBLE_BOND

public static final java.lang.String PROPERTY_KEY_DOUBLE_BOND

Key of type for property change of mode

See Also:

Constant Field Values

PROPERTY_KEY_SINGLE_UP_OR_DOWN_BOND

public static final java.lang.String PROPERTY_KEY_SINGLE_UP_OR_DOWN_BOND

Key of type for property change of mode

See Also:

Constant Field Values

Constructor Detail

ClearStereoAction

public ClearStereoAction(java.util.Map<java.lang.String,java.lang.String> params)

Initializes the action with parameters

Parameters:

params - the parameters of the action

Method Detail

getType

public java.lang.String getType()

Gets the type of the action as string. Used for XML serialization

Returns:

the type of the action as string

setChirality

public void setChirality(boolean chirality)

Sets the chirality value of absolute stereo action

Parameters:

chirality - the chirality value of absolute stereo action

isChirality

public boolean isChirality()

Gets the chirality value of absolute stereo action

Returns:

the chirality value of absolute stereo action

setDoubleBond

public void setDoubleBond(boolean doubleBond)

Sets the double bond value of absolute stereo action

Parameters:

doubleBond - the double bond value of absolute stereo action

isDoubleBond

public boolean isDoubleBond()

Gets the double bond value of absolute stereo action

Returns:

the double bond value of absolute stereo action

setSingleUpOrDownBond

public void setSingleUpOrDownBond(boolean singleUpOrDownBond)

Sets the single wedge value of absolute stereo action

Parameters:

singleUpOrDownBond - the single wedge value of absolute stereo action

isSingleUpOrDownBond

public boolean isSingleUpOrDownBond()

Gets the single wedge value of absolute stereo action

Returns:

the single wedge value of absolute stereo action

standardize1

protected Changes standardize1(Molecule molecule)

Description copied from class: AbstractStandardizerAction

This method contains the current standardization mechanism. Descendants needs to implement this method.
Special molecules containing more components (e.g. RgMolecule, RxnMolecule) are decomponented by the method AbstractStandardizerAction.getComponents(Molecule), and AbstractStandardizerAction.standardize1(Molecule) method is called on each component, before applied on the original molecule. If a descendant does not want this to occur, this method must be overridden.
Logs of standardization should be generated to a Logger, that can be collected by using StandardizerLogger.getLogger() method.

Specified by:

standardize1 in class AbstractStandardizerAction

Parameters:

molecule - the Molecule instance to be standardized

Returns:

the changes applied on the molecule during the standardization process

clone

public ClearStereoAction clone()
                        throws java.lang.CloneNotSupportedException

Overrides:

clone in class AbstractStandardizerAction

Throws:

java.lang.CloneNotSupportedException

toString

public java.lang.String toString()

Overrides:

toString in class AbstractStandardizerAction