@PublicAPI public interface StandardizerConfigurationReader
StandardizerActionRunner
InvalidStandardizerAction
containing
the text representation of the error. Exceptions should not be thrown, so all
errors can be found in the configuration. This way, partially correct
configurations can be executed on the target molecules.StandardizerAction.isValid()
function should return false.Modifier and Type | Field and Description |
---|---|
static java.lang.String |
DEFAULT_STANDARDIZERS_CONFIG_PATH
path to default standardizer action configuration list
|
static java.lang.String |
USER_STANDARDIZERS_CONFIG_PATH
path to user-defined standardizer action configuration list
|
Modifier and Type | Method and Description |
---|---|
StandardizerConfiguration |
getConfiguration()
Gets the configuration defined by the pre-set configuration file.
|
void |
setPath(java.lang.String path)
Sets the base path of the configuration.
|
static final java.lang.String USER_STANDARDIZERS_CONFIG_PATH
static final java.lang.String DEFAULT_STANDARDIZERS_CONFIG_PATH
StandardizerConfiguration getConfiguration()
StandardizerConfiguration
instance which can be run
by a StandardizerActionRunner
instancevoid setPath(java.lang.String path)
path
- the base path of the configuration