Package com.chemaxon.clustering.common

Common components of clustering related APIs.

Please note that classes and interfaces in this package are marked with @Beta annotation, so they can be subject of incompatible changes or removal in later releases.

Interface Summary

Interface	Description
Cluster<T>	Cluster represents a group of structures.
DissimilarityInput	DissimilarityInput represents an input set for similarity based clustering algorithm.
HierarchicCluster<T>	Represents a group (cluster) of structures, possibly divided into further non overlapping clusters.
HierarchicClustering<T,C extends HierarchicCluster<T>>	A grouping of structures into disjunct hierarchical groups.
IDBasedAssigner	Assign levels to IDBasedHierarchicClustering.
IDBasedHierarchicCluster	A Hierarchic cluster over integers, preferably IDs; having associated integral ClusterID.
IDBasedHierarchicClustering	A Hierarchic clustering over integers, preferably IDs.
IDBasedSingleLevelClustering	A SingleLevelClustering of clusters containing Integer IDs.
LevelAssigner<L,T extends HierarchicCluster<L>>	Assigns levels for clusters and leaves.
MolInput	Dissimilarity input implementation which can retrieve underlying Molecules.
SingleLevelClustering<T,C extends Cluster<T>>	A grouping of structures into disjunct groups.

Class Summary

Class	Description
IDBasedAssignerBuilder	An ID based cluster level assigner builder.
IDBasedClusterBuilder	Builder for ID based non-hierarchic clustering.
IDBasedHierarchicClusterBuidler	Builder for integer ID based hierarchic cluster building.
MolInputBuilder	Convenience class to compose input from molecules to a clustering algorithm.
UnitPathAssigner	Assigning unit distance based on path length from leaves/roots.

Enum Summary

Enum	Description
HierarchicClustering.Alignment	Level interpretation.