com.chemaxon.search

Class MatchingOptions

java.lang.Object

com.chemaxon.search.MatchingOptions

Direct Known Subclasses:

McsSearchOptions

@PublicAPI
public abstract class MatchingOptions
extends java.lang.Object

Abstract class containing search options used by multiple algorithms.

Author:

Peter Englert

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	MatchingOptions.Builder Abstract builder class for creating the base part of immutable instances of any class inheriting the enclosing MatchingOptions class.

Constructor Summary

Constructors

Modifier	Constructor and Description
protected	MatchingOptions(MatchingOptions.Builder builder) Creates a MatchingOptions instance with the settings of the given builder object.

Method Summary

Modifier and Type	Method and Description
CustomMatcherFactory	getCustomMatching() Gets the factory that is used to create the custom matcher.
boolean	isAtomMapMatching() Gets whether atom map numbers are considered in search.
boolean	isAtomTypeMatching() Gets whether atom types are considered in search.
boolean	isBondTypeMatching() Gets whether bond types are considered in search.
boolean	isChargeMatching() Gets whether formal charges are considered in search.
boolean	isExactQueryAtomMatching() Gets whether query atoms are matched only to query atoms of exactly the same type.
boolean	isExactQueryBondMatching() Gets whether query bonds are matched only to query bonds of exactly the same type.
boolean	isIsotopeMatching() Gets whether isotopes are considered in search.
boolean	isOrderSensitiveSearch() Gets whether search is sensitive to the order of the matched atoms and bonds when searching for multiple hits.
boolean	isRadicalMatching() Gets whether radicals are considered in search.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MatchingOptions

protected MatchingOptions(MatchingOptions.Builder builder)

Creates a MatchingOptions instance with the settings of the given builder object.

Parameters:

builder - the MatchingOptions.Builder object

Method Detail

isAtomTypeMatching

public boolean isAtomTypeMatching()

Gets whether atom types are considered in search. See MatchingOptions.Builder.atomTypeMatching(boolean).

Returns:

true if atoms with different atom types are considered different

isBondTypeMatching

public boolean isBondTypeMatching()

Gets whether bond types are considered in search. See MatchingOptions.Builder.bondTypeMatching(boolean).

Returns:

true if bonds with different bond types are considered different

isChargeMatching

public boolean isChargeMatching()

Gets whether formal charges are considered in search. See MatchingOptions.Builder.chargeMatching(boolean).

Returns:

true if atoms with different charges are considered different

isIsotopeMatching

public boolean isIsotopeMatching()

Gets whether isotopes are considered in search. See MatchingOptions.Builder.isotopeMatching(boolean).

Returns:

true if atoms with different mass numbers are considered different

isRadicalMatching

public boolean isRadicalMatching()

Gets whether radicals are considered in search. See MatchingOptions.Builder.radicalMatching(boolean).

Returns:

true if atoms with different radicals are considered different

isAtomMapMatching

public boolean isAtomMapMatching()

Gets whether atom map numbers are considered in search. See MatchingOptions.Builder.atomMapMatching(boolean).

Returns:

true if atoms with different atom map numbers are considered different

isExactQueryAtomMatching

public boolean isExactQueryAtomMatching()

Gets whether query atoms are matched only to query atoms of exactly the same type. See MatchingOptions.Builder.exactQueryAtomMatching(boolean).

Returns:

true if query atoms match only the same query atoms

isExactQueryBondMatching

public boolean isExactQueryBondMatching()

Gets whether query bonds are matched only to query bonds of exactly the same type. See MatchingOptions.Builder.exactQueryBondMatching(boolean).

Returns:

true if query bonds match only the same query bonds

getCustomMatching

public CustomMatcherFactory getCustomMatching()

Gets the factory that is used to create the custom matcher. If no custom matcher is used, this method returns null. See MatchingOptions.Builder.customMatching(CustomMatcherFactory).

Returns:

the custom matcher factory, or null if it is not defined

isOrderSensitiveSearch

public boolean isOrderSensitiveSearch()

Gets whether search is sensitive to the order of the matched atoms and bonds when searching for multiple hits. See MatchingOptions.Builder.orderSensitive(boolean).

Returns:

true if the search is order sensitive