| Package | Description |
|---|---|
| chemaxon.calculations |
Contains chemical computation modules.
|
| chemaxon.calculations.bbb |
BBB score calculator.
|
| chemaxon.calculations.cip | |
| chemaxon.calculations.clean | |
| chemaxon.calculations.cnsmpo |
CNS MPO score calculator.
|
| chemaxon.calculations.dipole | |
| chemaxon.calculations.hydrogenize | |
| chemaxon.calculations.nmr | |
| chemaxon.calculations.nmr.io | |
| chemaxon.calculations.stereo | |
| chemaxon.calculator | |
| chemaxon.checkers |
Structure checkers can be used to filter drawing mistakes or special structural elements.
|
| chemaxon.checkers.result |
This package is used to identify problems found in molecules.
|
| chemaxon.checkers.runner |
This package supports the automatic running of structure checkers.
|
| chemaxon.checkers.runner.configuration.reader |
Extension package of the automatic runner functionality.
|
| chemaxon.common.util | |
| chemaxon.core | |
| chemaxon.core.calculations.stereo | |
| chemaxon.core.calculations.valencecheck | |
| chemaxon.core.util | |
| chemaxon.descriptors | |
| chemaxon.descriptors.scalars | |
| chemaxon.fixers |
Structure fixers can be used to fix problems identified by structure checker instances.
|
| chemaxon.formats |
Provides miscellaneous utility classes for converting between various
molecule file formats, importing structures, and compressing Molfiles.
|
| chemaxon.formats.recognizer |
Provides classes to recognize files of various file formats.
|
| chemaxon.jchem.db | |
| chemaxon.jep |
Chemical Terms Evaluator classes.
|
| chemaxon.jep.context |
Specific chemical terms evaluation contexts.
|
| chemaxon.license |
Classes related licenses, license handling, validating, GUI and documentation.
|
| chemaxon.marvin |
Contains utility classes for rendering molecules.
|
| chemaxon.marvin.alignment |
The 3D molecular alignment package that can be used to align two or more 3D molecules onto each other.
|
| chemaxon.marvin.alignment.atrop |
Utilities for
AtropIsomerDetector. |
| chemaxon.marvin.beans |
Provides bean classes for creating Marvin based user interface.
|
| chemaxon.marvin.calculations |
Provides specific plugin, plugin loader and table form output implementations.
|
| chemaxon.marvin.common |
Contains a class for handling user settings.
|
| chemaxon.marvin.io |
Provides classes for molecule import and export through data streams.
|
| chemaxon.marvin.io.formats |
Core package of any import/export module.
|
| chemaxon.marvin.io.formats.mdl |
Import and export modules for MDL Molfile, SDfile, RDfile, Rxnfile and (Chemaxon) compressed molfile.
|
| chemaxon.marvin.io.formats.smiles | |
| chemaxon.marvin.io.formats.vectgraphics | |
| chemaxon.marvin.io.image | |
| chemaxon.marvin.io.image.exporter | |
| chemaxon.marvin.modules.datatransfer |
Since Marvin 5.3 this package contains the clipboard handler
infrastructure in Marvin.
|
| chemaxon.marvin.modules.reaction | |
| chemaxon.marvin.paint |
Defines display options constants.
|
| chemaxon.marvin.paint.constants | |
| chemaxon.marvin.plugin |
Contains the classes responsible for calculator plugin loading, parameter setting,
running and displaying mechanism.
|
| chemaxon.marvin.plugin.concurrent |
Classes to achieve concurrent processing of calculator plugins.
|
| chemaxon.marvin.plugin.gui |
Calculator plugin common GUI classes.
|
| chemaxon.marvin.services |
Marvin Services provides API and support for accessing remote
services from Marvin Sketch and other tools.
|
| chemaxon.marvin.services.httpservice | |
| chemaxon.marvin.services.json | |
| chemaxon.marvin.services.localservice | |
| chemaxon.marvin.services.soap | |
| chemaxon.marvin.services.xmlrpcservice | |
| chemaxon.marvin.sketch |
Contains the sketcher's core classes and various sketching modes.
|
| chemaxon.marvin.sketch.swing.modules.documentstyle | |
| chemaxon.marvin.space |
Contains the core classes of MarvinSpace including the graphic canvas and the
basic visualizer classes.
|
| chemaxon.marvin.space.monitor |
Classes that represent measurement and changing of coordinates according to measurements in MarvinSpace.
|
| chemaxon.marvin.uif.dialog | |
| chemaxon.marvin.util |
Contains some utilities for example for molecule cleaning and Swing.
|
| chemaxon.marvin.util.codeassist | |
| chemaxon.marvin.view |
Control records in MarvinView.
|
| chemaxon.marvin.view.swing |
Swing support for MarvinView tables.
|
| chemaxon.naming |
Name to Structure conversion.
|
| chemaxon.naming.document |
Document to Structure (D2S) conversion.
|
| chemaxon.naming.document.annotate | |
| chemaxon.pharmacophore |
Classes for pharmacophore point perception, pharmacophore fingerprint generation
and pharmacophore dissimilarity calculations.
|
| chemaxon.reaction |
Classes for reaction processing related tasks.
|
| chemaxon.sss | |
| chemaxon.sss.screen | |
| chemaxon.sss.search | |
| chemaxon.sss.search.options | |
| chemaxon.standardizer |
Contains packages for structure standardization.
|
| chemaxon.standardizer.actions |
Contains basic standardizer actions.
|
| chemaxon.standardizer.advancedactions |
Contains advanced standardizer actions.
|
| chemaxon.standardizer.concurrent |
Contains classes for concurrent execution of standardization.
|
| chemaxon.standardizer.configuration |
Contains classes for handling configurations of standardizer.
|
| chemaxon.standardizer.configuration.reader |
Contains classes for handling configuration deserialization.
|
| chemaxon.standardizer.runner |
Contains classes for executing standardization based on a configuration.
|
| chemaxon.struc |
Provides classes for implementing and manipulating chemical structures.
Serialization of these classes is `standardized' in Marvin 5.3. |
| chemaxon.struc.graphics |
Contains graphics MDocument elements.
|
| chemaxon.struc.prop |
Utility classes that represent molecular properties and convert molecular property Strings to values and vice versa.
|
| chemaxon.struc.sgroup |
S-group related classes and interfaces.
Serialization of the classes is `standardized' in Marvin 3.1.4. |
| chemaxon.util |
Provides general utility classes.
|
| chemaxon.util.concurrent.marvin | |
| chemaxon.util.iterator |
Provides iterator classes for molecules and their components.
|
| com.chemaxon.apidiscovery |
API Discovery framework.
|
| com.chemaxon.apidiscovery.annotations |
Annotations used by the API Discovery framework.
|
| com.chemaxon.apidiscovery.interfaces |
Interfaces introduced for the API Discovery framework.
|
| com.chemaxon.apidiscovery.util |
Various utilities.
|
| com.chemaxon.calculations.cli | |
| com.chemaxon.calculations.common |
Common components of Calculator APIs.
|
| com.chemaxon.calculations.elemanal |
API of the elemental analysis functionality.
|
| com.chemaxon.calculations.gui | |
| com.chemaxon.calculations.io | |
| com.chemaxon.calculations.solubility | |
| com.chemaxon.calculations.stereoanal |
API of the Stereo Analysis Plugin.
|
| com.chemaxon.calculations.stereoanal.filters |
Core filter classes.
|
| com.chemaxon.calculations.stereoanal.filters.atrop |
Atrop stereo filter implementations.
|
| com.chemaxon.calculations.stereoanal.filters.axial |
Axial stereo filter implementations.
|
| com.chemaxon.calculations.stereoanal.filters.cistrans |
Cis-trans stereo filter implementations.
|
| com.chemaxon.calculations.stereoanal.filters.tetrahedral |
Tetrahedral stereo filter implementations.
|
| com.chemaxon.calculations.stereoanal.stereocenters |
Stereocenter implementations of Stereo Analysis API.
|
| com.chemaxon.calculations.stereoisomers | |
| com.chemaxon.calculations.util |
Various utilities used in calculations, descriptors, clustering and overlap analysis.
|
| com.chemaxon.clustering.common |
Common components of clustering related APIs.
|
| com.chemaxon.clustering.framework |
Hierarchic structural framework based clustering.
|
| com.chemaxon.clustering.singlelinkage |
Single linkage clustering algorithm.
|
| com.chemaxon.clustering.sphex |
Sphere exclusion clustering algorithm.
|
| com.chemaxon.clustering.util |
Clustering related utilities.
|
| com.chemaxon.clustering.wards |
Ward's minimum variance implemented as a generic agglomerative hierarchical clustering algorithm.
|
| com.chemaxon.common.annotations | |
| com.chemaxon.descriptors.alignment |
3D flexible alignment based molecular shape similarity calculation.
|
| com.chemaxon.descriptors.common |
Unguarded descriptor handling.
|
| com.chemaxon.descriptors.db |
Interfaces for database import/export.
|
| com.chemaxon.descriptors.fingerprints.cfp |
API of the Chemaxon hashed fingerprint family molecular descriptors.
|
| com.chemaxon.descriptors.fingerprints.ecfp |
API of the ECFP fingerprint family molecular descriptors.
|
| com.chemaxon.descriptors.fingerprints.maccs |
ChemAxon implementation of the MACCS 166 bit fingerprints.
|
| com.chemaxon.descriptors.fingerprints.pf2d |
API of the 2D pharmacophore fingerprint family molecular descriptors.
|
| com.chemaxon.descriptors.metrics |
Common descriptor comparison metrics.
|
| com.chemaxon.descriptors.vectors.binary |
Generic binary vector descriptors.
|
| com.chemaxon.descriptors.vectors.floats |
Generic floating point vector descriptors.
|
| com.chemaxon.mapper | |
| com.chemaxon.overlap.io | |
| com.chemaxon.search |
Tools for chemical search.
|
| com.chemaxon.search.mcs |
Contains classes for finding the maximum common substructure (MCS) of molecular structures.
|
| com.chemaxon.search.mcs.buildup |
Contains MCS algorithm implementation based on the "build up" method.
|
| com.chemaxon.search.mcs.maxclique |
Contains MCS algorithm implementation based on the "maximum clique" method.
|
| com.chemaxon.search.mcs.upperbound |
Contains classes for calculating upper bound estimations for maximum common substructure (MCS) search.
|
| com.chemaxon.search.transformation | |
| com.chemaxon.search.transformation.transformers | |
| com.chemaxon.version |