Package chemaxon.alignment

Class NodeColor.ExtendedAtomColoring

java.lang.Object

chemaxon.alignment.NodeColor

chemaxon.alignment.NodeColor.ExtendedAtomColoring

Enclosing class:

NodeColor

public static final class NodeColor.ExtendedAtomColoring
extends NodeColor

Nested Class Summary

Nested classes/interfaces inherited from class chemaxon.alignment.NodeColor

NodeColor.ExtendedAtomColoring

Field Summary

Fields

Modifier and Type	Field	Description
static final int	OFFSET

Fields inherited from class chemaxon.alignment.NodeColor

ANCHOR

Method Summary

Modifier and Type	Method	Description
String	getLabel()	Returns a label for the coloring scheme.
boolean	isSameType(int type1, int type2)	Determines if two types are considered the same based on the coloring scheme.
boolean	isSelected(int t)	Determines if the given type is selected based on the coloring scheme.
BitSet	markSingleTypes(BitSet b, int t)	Marks the given type in the provided BitSet according to the coloring scheme.
String	typeLabel(int t)	Returns a label for the given type based on the coloring scheme.

Methods inherited from class chemaxon.alignment.NodeColor

addWeight, create, getScheme, getWeight, isAliphaticRingCenter, isAnchor, isAromaticRingCenter, isSameTypeOrBothAnchor, labelAsAnchor, setNotSpec, withoutAnchorLabel

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

OFFSET

public static final int OFFSET

See Also:

• Constant Field Values

Method Details

isSelected

public boolean isSelected(int t)

Description copied from class: NodeColor

Determines if the given type is selected based on the coloring scheme.

Specified by:

isSelected in class NodeColor

Parameters:

t - the type to check

Returns:

true if the type is selected, false otherwise

isSameType

public boolean isSameType(int type1,
 int type2)

Description copied from class: NodeColor

Determines if two types are considered the same based on the coloring scheme.

Specified by:

isSameType in class NodeColor

Parameters:

type1 - the first type to compare

type2 - the second type to compare

Returns:

true if the types are considered the same, false otherwise

markSingleTypes

public BitSet markSingleTypes(BitSet b,
 int t)

Description copied from class: NodeColor

Marks the given type in the provided BitSet according to the coloring scheme.

Specified by:

markSingleTypes in class NodeColor

Parameters:

b - the BitSet to mark the type in

t - the type to mark

Returns:

the updated BitSet with the type marked

typeLabel

public String typeLabel(int t)

Description copied from class: NodeColor

Returns a label for the given type based on the coloring scheme.

Specified by:

typeLabel in class NodeColor

Parameters:

t - the type to label

Returns:

a String label for the given type

getLabel

public String getLabel()

Description copied from class: NodeColor

Returns a label for the coloring scheme.

Specified by:

getLabel in class NodeColor

Returns:

a String label for the given type