Class AtomTypeChecker

All Implemented Interfaces:
StructureChecker, chemaxon.license.Licensable, PropertyChangeListener, Cloneable, EventListener
Direct Known Subclasses:
RareElementChecker

@PublicApi public class AtomTypeChecker extends AtomChecker
A descendant of AtomChecker checking different atom types (represented by atom's symbol) in the molecule.
Since:
Marvin 5.4
  • Field Details

  • Constructor Details

    • AtomTypeChecker

      protected AtomTypeChecker(StructureCheckerErrorType type)
      Parameterized constructor providing the possibility for descendants to initialize with their own error type.
      Parameters:
      type - is an instance is StructureCheckerErrorType
    • AtomTypeChecker

      public AtomTypeChecker()
      Default constructor.
    • AtomTypeChecker

      public AtomTypeChecker(Map<String,String> params)
      Parameterized constructor. If types parameter is given its value will be parsed and split along "," characters and all substring which represents a type will be search during the checking mechanism.
      Parameters:
      params - a Map instance which contains String pairs. Key is the name of the parameter.
  • Method Details

    • check

      protected boolean check(Molecule molecule, MolAtom component)
      Description copied from class: ComponentChecker
      Checks if the component with index i has problem
      Specified by:
      check in class ComponentChecker<MolAtom>
      Parameters:
      molecule - is a Molecule instance
      component - the current component to check
      Returns:
      true if the component has problem, false otherwise
    • getTypes

      public List<String> getTypes()
      Returns the checked atom types
      Returns:
      the checked atom types
      Since:
      5.7
    • setTypes

      public void setTypes(List<String> types)
      Sets the checked atom types
      Parameters:
      types - the new value
      Since:
      5.7