Package chemaxon.checkers
Class CircularRGroupReferenceChecker
java.lang.Object
chemaxon.checkers.AbstractStructureChecker
chemaxon.checkers.CircularRGroupReferenceChecker
- All Implemented Interfaces:
StructureChecker
,chemaxon.license.Licensable
,PropertyChangeListener
,Cloneable
,EventListener
A descendant of
AbstractStructureChecker
detecting circular R-group
references.- Since:
- Marvin 5.10
-
Field Summary
Fields inherited from class chemaxon.checkers.AbstractStructureChecker
errorType, propertyChangeSupport
Fields inherited from interface chemaxon.checkers.StructureChecker
PROPERTY_KEY_VALID
-
Constructor Summary
-
Method Summary
Modifier and TypeMethodDescriptionprotected StructureCheckerResult
This method contains the current checking mechanism.protected void
convertResult
(Molecule originalMolecule, Molecule expandedMolecule, StructureCheckerResult result, Map<MolAtom, MolAtom> atomMap, Map<MolBond, MolBond> bondMap) This implementation does nothing.protected Molecule
This implementation does nothing.Methods inherited from class chemaxon.checkers.AbstractStructureChecker
addPropertyChangeListener, addPropertyChangeListener, check, clone, cloneItem, equals, getDescription, getDescriptor, getEditorClassName, getErrorCode, getErrorDescription, getErrorType, getHelpText, getIcon, getLocalMenuName, getName, hashCode, isAvailable, isLicensed, isValid, propertyChange, removePropertyChangeListener, removePropertyChangeListener, setDescription, setHelpText, setIcon, setLicenseEnvironment, setLocalMenuName, setMoreErrorMessage, setName, setNoErrorMessage, setOneErrorMessage, toString
-
Constructor Details
-
CircularRGroupReferenceChecker
public CircularRGroupReferenceChecker()Initializes the checker
-
-
Method Details
-
check1
Description copied from class:AbstractStructureChecker
This method contains the current checking mechanism.- Specified by:
check1
in classAbstractStructureChecker
- Parameters:
molecule
- theMolecule
instance to be checked for problems- Returns:
- a
StructureCheckerResult
which represents the problem or null if no problem found
-
convertResult
protected void convertResult(Molecule originalMolecule, Molecule expandedMolecule, StructureCheckerResult result, Map<MolAtom, MolAtom> atomMap, Map<MolBond, MolBond> bondMap) This implementation does nothing.- Overrides:
convertResult
in classAbstractStructureChecker
- Parameters:
originalMolecule
- the original moleculeexpandedMolecule
- the cloned then expanded moleculeresult
- the structure checker result on cloned moleculeatomMap
- the mapping of cloned molecule and original molecule atomsbondMap
- the mapping of cloned molecule and original molecule bonds
-
expandMolecule
protected Molecule expandMolecule(Molecule molecule, Map<MolAtom, MolAtom> atomMap, Map<MolBond, MolBond> bondMap) This implementation does nothing.- Overrides:
expandMolecule
in classAbstractStructureChecker
- Parameters:
molecule
- the molecule to check- Returns:
- the molecule
-