Package chemaxon.struc.graphics

Class MMoleculeMovie

java.lang.Object

chemaxon.struc.MObject

chemaxon.struc.graphics.MMoleculeMovie

All Implemented Interfaces:

Serializable, Cloneable

@PublicApi
public class MMoleculeMovie
extends MObject

Molecule animation.

Since:

Marvin 4.0, 06/30/2005

See Also:

• Serialized Form

Field Summary

Fields inherited from class chemaxon.struc.MObject

TRANSFORM_DISTORT

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	MMoleculeMovie(MMoleculeMovie mma)	Copy constructor.
	MMoleculeMovie(Molecule[] mols)	Contructs a molecule animation.

Method Summary

Modifier and Type	Method	Description
void	calcCenter(DPoint3 p, CTransform3D t)	Calculates the geometrical center.
MMoleculeMovie	clone()	Creates a clone.
boolean	containsAtom(MolAtom a)	Checks if the atom set contains the specified atom object.
double	distanceFrom(double x, double y, CTransform3D t)	Gets the 2D distance from the specified point.
int	getCurrentFrameIndex()	Gets the current frame index.
Molecule	getCurrentMolecule()	Gets the stored molecule graph.
Molecule	getMolecule(int i)	Gets the specified frame.
int	getMoleculeCount()	Gets the number of frames.
Molecule[]	getMolecules()	Gets all molecules.
MPoint	getPoint(int i)	Gets a point of the object.
int	getPointCount()	Gets the number of points (atoms).
boolean	hasSelection()	Deprecated, for removal: This API element is subject to removal in a future version.
boolean	isEmpty()	A chemical structure object is empty if the molecule graph is empty.
void	removeAtom(MolAtom atom)	Removes the atom from the corresponding molecule object.
void	setCurrentFrameIndex(int i)	Sets the current frame index.
void	setSelected(boolean s)	Selects or unselects the object.
void	transform(CTransform3D t, int opts, CTransform3D trot)	Transforms all points.
void	unselectContents()	Unselects atoms.

Methods inherited from class chemaxon.struc.MObject

addAttributeKeys, addCdataAttributeKeys, addNotify, checkValidity, connectToSgroupOfAtom, containsPoint, distanceFrom, finishCloning, fixClonedPoints, getAttribute, getBackground, getColor, getContainerMObject, getLineColor, getPointRef, getPointRefCount, hasBackground, hasColor, hasLineColor, isChildOf, isInternalSelectable, isReactionArrow, isSelectableNow, isSelected, isTransformable, makeColor, removeChild, removeNotify, replaceAtom, setAttribute, setBackground, setColor, setLineColor, toString, updateBoundingRect, updateBoundingRect

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

MMoleculeMovie

public MMoleculeMovie(Molecule[] mols)

Contructs a molecule animation.

Parameters:

mols - the molecules

MMoleculeMovie

protected MMoleculeMovie(MMoleculeMovie mma)

Copy constructor.

Parameters:

mma - the original object

Method Details

getMoleculeCount

public int getMoleculeCount()

Gets the number of frames.

Returns:

the number of frames

getMolecule

public Molecule getMolecule(int i)

Gets the specified frame.

Returns:

a molecule

getMolecules

public Molecule[] getMolecules()

Gets all molecules.

Returns:

molecules

getCurrentFrameIndex

public int getCurrentFrameIndex()

Gets the current frame index.

Returns:

the frame index

setCurrentFrameIndex

public void setCurrentFrameIndex(int i)

Sets the current frame index.

Parameters:

i - the frame index

getCurrentMolecule

public Molecule getCurrentMolecule()

Gets the stored molecule graph.

Returns:

the molecule graph

clone

public MMoleculeMovie clone()

Creates a clone.

Overrides:

clone in class MObject

Returns:

the clone

isEmpty

public boolean isEmpty()

A chemical structure object is empty if the molecule graph is empty.

Overrides:

isEmpty in class MObject

Returns:

true if empty, false otherwise

getPointCount

public int getPointCount()

Gets the number of points (atoms).

Specified by:

getPointCount in class MObject

Returns:

the number of points

getPoint

public MPoint getPoint(int i)

Gets a point of the object.

Specified by:

getPoint in class MObject

Parameters:

i - the point index

Returns:

the point's clone

containsAtom

public boolean containsAtom(MolAtom a)

Checks if the atom set contains the specified atom object.

Overrides:

containsAtom in class MObject

Returns:

true if the atom set contains the specified object, false otherwise

transform

public void transform(CTransform3D t,
 int opts,
 CTransform3D trot)

Transforms all points.

Specified by:

transform in class MObject

Parameters:

t - the transformation matrix

opts - transform options or 0

trot - the viewing transformation or null

See Also:

• MObject.TRANSFORM_DISTORT

calcCenter

public void calcCenter(DPoint3 p,
 CTransform3D t)

Calculates the geometrical center.

Specified by:

calcCenter in class MObject

Parameters:

p - store the coordinates here

t - the transformation matrix or null

Since:

Marvin 4.1, 04/28/2006

distanceFrom

public double distanceFrom(double x,
 double y,
 CTransform3D t)

Gets the 2D distance from the specified point.

Specified by:

distanceFrom in class MObject

Parameters:

x - the x coordinate

y - the y coordinate

t - transformation or null

setSelected

public void setSelected(boolean s)

Selects or unselects the object.

Overrides:

setSelected in class MObject

Parameters:

s - use true to select, false to unselect

hasSelection

@Deprecated(forRemoval=true)
@SubjectToRemoval(date=JUL_01_2025)
public boolean hasSelection()

Deprecated, for removal: This API element is subject to removal in a future version.

Checks the existence of the selection.

Returns:

true if selection exists, false otherwise

unselectContents

public void unselectContents()

Unselects atoms.

Overrides:

unselectContents in class MObject

removeAtom

public void removeAtom(MolAtom atom)

Description copied from class: MObject

Removes the atom from the corresponding molecule object.

Overrides:

removeAtom in class MObject

Parameters:

atom - the atom to remove