Package chemaxon.fixers

Class AbstractStructureFixer

java.lang.Object

chemaxon.fixers.AbstractStructureFixer

All Implemented Interfaces:

StructureFixer

Direct Known Subclasses:

AbsentChiralFlagFixer, AbsoluteStereoFixer, AddChiralFlagFixer, BondAngleFixer, BondLengthFixer, CleanFixer, ClearWedgeFixer, ContractGroupFixer, ConvertAliasToGroupFixer, ConvertPseudoToGroupFixer, ConvertToAtomFixer, ConvertToCarbonFixer, ConvertToCrossedDoubleBondFixer, ConvertToElementalFormFixer, ConvertToIonicFormFixer, ConvertToPlainDoubleBondFixer, ConvertToSingleBondFixer, ConvertToWigglyDoubleBondFixer, CrossedDoubleBondFixer, DearomatizeFixer, DistanceBasedMetalloceneFixer, ExpandGroupFixer, ExplicitHydrogenFixer, FlipWedgeBondFixer, IsotopeFixer, MapMoleculeFixer, MapReactionFixer, MetalloceneFixer, NeutralizeChargeFixer, PartialCleanFixer, RearomatizeFixer, RearrangeWedgesFixer, RemoveAliasFixer, RemoveAtomFixer, RemoveAtomMapFixer, RemoveAtomQueryPropertyFixer, RemoveAtomValueFixer, RemoveAttachedDataFixer, RemoveBondFixer, RemoveBondTopologyFixer, RemoveBracketsFixer, RemoveChiralFlagFixer, RemoveExplicitHydrogenFixer, RemoveInvalidChiralFlagFixer, RemoveRadicalFixer, RemoveReactingCenterBondMarkFixer, RemoveStereoCareBoxFixer, RemoveStereoInversionRetentionMarkFixer, RemoveUnreferencedRgroupDefinitionsFixer, RemoveValencePropertyFixer, RemoveZCoordinateFixer, RgroupAttachmentFixer, SubstructureFixer, UngroupFixer, ValenceFixer, WedgeCleanFixer, WigglyDoubleBondFixer

@PublicApi
public abstract class AbstractStructureFixer
extends Object
implements StructureFixer

This class is the default abstract implementation of StructureFixer interface

Since:

Marvin 5.3

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	AbstractStructureFixer()	Constructor to create a Structure fixer

Method Summary

Modifier and Type	Method	Description
String	getDescription()	Deprecated, for removal: This API element is subject to removal in a future version.
StructureFixerDescriptor	getDescriptor()	Deprecated, for removal: This API element is subject to removal in a future version.
String	getName()	Deprecated, for removal: This API element is subject to removal in a future version.
void	setDescription(String description)	Deprecated, for removal: This API element is subject to removal in a future version.
void	setName(String name)	Deprecated, for removal: This API element is subject to removal in a future version.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface chemaxon.fixers.StructureFixer

fix

Constructor Details

AbstractStructureFixer

protected AbstractStructureFixer()

Constructor to create a Structure fixer

Method Details

getName

@Deprecated(forRemoval=true)
@SubjectToRemoval(date=JUL_01_2025)
public String getName()

Deprecated, for removal: This API element is subject to removal in a future version.

Specified by:

getName in interface StructureFixer

Returns:

the name of the fixer

setName

@Deprecated(forRemoval=true)
@SubjectToRemoval(date=JUL_01_2025)
public void setName(String name)

Deprecated, for removal: This API element is subject to removal in a future version.

Description copied from interface: StructureFixer

Sets the name of the fixer

Specified by:

setName in interface StructureFixer

Parameters:

name - is a String instance

getDescription

@Deprecated(forRemoval=true)
@SubjectToRemoval(date=JUL_01_2025)
public String getDescription()

Deprecated, for removal: This API element is subject to removal in a future version.

Specified by:

getDescription in interface StructureFixer

Returns:

the description of the fixer

setDescription

@Deprecated(forRemoval=true)
@SubjectToRemoval(date=JUL_01_2025)
public void setDescription(String description)

Deprecated, for removal: This API element is subject to removal in a future version.

Description copied from interface: StructureFixer

Sets the description of the fixer

Specified by:

setDescription in interface StructureFixer

Parameters:

description - is a String instance

getDescriptor

@Deprecated(forRemoval=true)
@SubjectToRemoval(date=JUL_01_2025)
public StructureFixerDescriptor getDescriptor()

Deprecated, for removal: This API element is subject to removal in a future version.

Description copied from interface: StructureFixer

Gets the descriptor object of the fixer.

Specified by:

getDescriptor in interface StructureFixer

Returns:

the descriptor object