Package chemaxon.fixers

Interface StructureFixer

All Known Implementing Classes:

AbsentChiralFlagFixer, AbsoluteStereoFixer, AbstractStructureFixer, AddChiralFlagFixer, BondAngleFixer, BondLengthFixer, CleanFixer, ClearWedgeFixer, ContractGroupFixer, ConvertAliasToGroupFixer, ConvertPseudoToGroupFixer, ConvertToAtomFixer, ConvertToCarbonFixer, ConvertToCrossedDoubleBondFixer, ConvertToElementalFormFixer, ConvertToIonicFormFixer, ConvertToPlainDoubleBondFixer, ConvertToSingleBondFixer, ConvertToWigglyDoubleBondFixer, CrossedDoubleBondFixer, DearomatizeFixer, DistanceBasedMetalloceneFixer, ExpandGroupFixer, ExplicitHydrogenFixer, FlipWedgeBondFixer, IsotopeFixer, MapMoleculeFixer, MapReactionFixer, MetalloceneFixer, NeutralizeChargeFixer, PartialCleanFixer, RearomatizeFixer, RearrangeWedgesFixer, RemoveAliasFixer, RemoveAtomFixer, RemoveAtomMapFixer, RemoveAtomQueryPropertyFixer, RemoveAtomValueFixer, RemoveAttachedDataFixer, RemoveBondFixer, RemoveBondTopologyFixer, RemoveBracketsFixer, RemoveChiralFlagFixer, RemoveExplicitHydrogenFixer, RemoveInvalidChiralFlagFixer, RemoveRadicalFixer, RemoveReactingCenterBondMarkFixer, RemoveStereoCareBoxFixer, RemoveStereoInversionRetentionMarkFixer, RemoveUnreferencedRgroupDefinitionsFixer, RemoveValencePropertyFixer, RemoveZCoordinateFixer, RgroupAttachmentFixer, SubstructureFixer, UngroupFixer, ValenceFixer, WedgeCleanFixer, WigglyDoubleBondFixer

@PublicApi
public interface StructureFixer

A StructureFixer can fix a Molecule problem identified by a StructureCheckerResult

Since:

Marvin 5.3

Method Summary

Modifier and Type	Method	Description
boolean	fix(StructureCheckerResult result)	Fixes one molecule problem identified by the result
String	getDescription()	Deprecated, for removal: This API element is subject to removal in a future version.
StructureFixerDescriptor	getDescriptor()	Gets the descriptor object of the fixer.
String	getName()	Deprecated, for removal: This API element is subject to removal in a future version.
void	setDescription(String description)	Deprecated, for removal: This API element is subject to removal in a future version.
void	setName(String Name)	Deprecated, for removal: This API element is subject to removal in a future version.

Method Details

fix

boolean fix(StructureCheckerResult result)

Fixes one molecule problem identified by the result

Parameters:

result - is an instance of StructureCheckerResult which identifies the problem

Returns:

true if the fix was successful false otherwise

getDescription

@Deprecated(forRemoval=true)
@SubjectToRemoval(date=JUL_01_2025)
String getDescription()

Deprecated, for removal: This API element is subject to removal in a future version.

Returns:

the description of the fixer

setDescription

@Deprecated(forRemoval=true)
@SubjectToRemoval(date=JUL_01_2025)
void setDescription(String description)

Deprecated, for removal: This API element is subject to removal in a future version.

Sets the description of the fixer

Parameters:

description - is a String instance

getName

@Deprecated(forRemoval=true)
@SubjectToRemoval(date=JUL_01_2025)
String getName()

Deprecated, for removal: This API element is subject to removal in a future version.

Returns:

the name of the fixer

setName

@Deprecated(forRemoval=true)
@SubjectToRemoval(date=JUL_01_2025)
void setName(String Name)

Deprecated, for removal: This API element is subject to removal in a future version.

Sets the name of the fixer

Parameters:

Name - is a String instance

getDescriptor

StructureFixerDescriptor getDescriptor()

Gets the descriptor object of the fixer.

Returns:

the descriptor object