Interface VisualizationSettings

Visualization settings. Note, that export currently supports the variableAttachmentHighlight, rgroupAttachmentOrderVisible and structureHighlightVisible option only.

interface VisualizationSettings {
    aminoAcidsPerLine?: number;
    atomMapsVisible?: boolean;
    atomNumbersVisible?: boolean;
    atomRepresentation?: AtomRepresentation;
    attachedDataRepresentation?: AttachedDataRepresentation;
    chargeSign?: ChargeSign;
    cipStereoEZVisible?: boolean;
    cipStereoMPVisible?: boolean;
    cipStereoRSVisible?: boolean;
    colorScheme?: ColorScheme;
    coordinateBondStyle?: CoordinateBondStyle;
    customJournalStyles?: StyleSettings[];
    lonePairsVisible?: boolean;
    pointSize?: number;
    rgroupAttachmentOrderVisible?: boolean;
    stereoChiralLabel?: string;
    stereoChiralVisible?: boolean;
    stereoNotChiralLabel?: string;
    stereoNotChiralVisible?: boolean;
    stereoVisible?: boolean;
    structureHighlightVisible?: boolean;
    styleSettings?: StyleSettings;
    valenceErrorVisible?: boolean;
    variableAttachmentHighlight?: VariableAttachmentHighlight;
    variableAttachmentHighlightVisible?: boolean;
}

Properties

aminoAcidsPerLine? atomMapsVisible? atomNumbersVisible? atomRepresentation? attachedDataRepresentation? chargeSign? cipStereoEZVisible? cipStereoMPVisible? cipStereoRSVisible? colorScheme? coordinateBondStyle? customJournalStyles? lonePairsVisible? pointSize? rgroupAttachmentOrderVisible? stereoChiralLabel? stereoChiralVisible? stereoNotChiralLabel? stereoNotChiralVisible? stereoVisible? structureHighlightVisible? styleSettings? valenceErrorVisible? variableAttachmentHighlight? variableAttachmentHighlightVisible?

Properties

OptionalaminoAcidsPerLine

aminoAcidsPerLine?: number

Sets how many amino acids can ba displayed in one line when a peptide is imported. Default: 20

OptionalatomMapsVisible

atomMapsVisible?: boolean

Atom maps shown if true. Default: true

OptionalatomNumbersVisible

atomNumbersVisible?: boolean

Atom numbers shown if true. Default: true

OptionalatomRepresentation

atomRepresentation?: AtomRepresentation

Sets when and how to render atom on the canvas. Default: "H_ON_HETERO"

OptionalattachedDataRepresentation

attachedDataRepresentation?: AttachedDataRepresentation

Sets which information of attached data labels should be rendered on exported images. This setting only affects image export (headless mode). On the UI canvas, attached data labels always display the full format (Name Query Value Unit). Default: 'QUERY_VALUE_UNIT'

OptionalchargeSign

chargeSign?: ChargeSign

Sets how editor renders the charge sign. Default: "PLAIN"

OptionalcipStereoEZVisible

cipStereoEZVisible?: boolean

CIP stereo E/Z notations shown on canvas if true. Default: false

OptionalcipStereoMPVisible

cipStereoMPVisible?: boolean

CIP stereo M/P notations shown on canvas if true. Default: false

OptionalcipStereoRSVisible

cipStereoRSVisible?: boolean

CIP stereo R/S notations shown on canvas if true. Default: false

OptionalcolorScheme

colorScheme?: ColorScheme

Sets the coloring scheme of the editor. Default: "MONO"

OptionalcoordinateBondStyle

coordinateBondStyle?: CoordinateBondStyle

Sets the display style of coordinate bonds on the canvas. Default: "SOLID"

OptionalcustomJournalStyles

customJournalStyles?: StyleSettings[]

User defined journal styles.

OptionallonePairsVisible

lonePairsVisible?: boolean

Lone pairs shown if true. Default: true

OptionalpointSize

pointSize?: number

Sets internal point size to be used for generating images. This is read/measured from browser window by default.

OptionalrgroupAttachmentOrderVisible

rgroupAttachmentOrderVisible?: boolean

Show rgroup attachment order if true. Default: true

OptionalstereoChiralLabel

stereoChiralLabel?: string

Define the molecule-level chiral label. Default: "Absolute"

OptionalstereoChiralVisible

stereoChiralVisible?: boolean

Molecule-level chiral labels displayed if true. Default: false

OptionalstereoNotChiralLabel

stereoNotChiralLabel?: string

Define the molecule-level not-chiral label. Default: "Mixture"

OptionalstereoNotChiralVisible

stereoNotChiralVisible?: boolean

Molecule-level not-chiral labels displayed if true. Default: false

OptionalstereoVisible

stereoVisible?: boolean

Stereo notations displayed if true. Default: true

OptionalstructureHighlightVisible

structureHighlightVisible?: boolean

Controls the structure highlight visibility. Default: true

OptionalstyleSettings

styleSettings?: StyleSettings

Style settings for molecule visualization.

Defaults to "ACS 1996" Journal Style.

OptionalvalenceErrorVisible

valenceErrorVisible?: boolean

Valence errors highlighted if true. Default: true

OptionalvariableAttachmentHighlight

variableAttachmentHighlight?: VariableAttachmentHighlight

Optional setting to override the default variable attachment highlight rendering. "NONE" value is ignored if the settings is used for editor configuration. Default: "GRAY"

OptionalvariableAttachmentHighlightVisible

variableAttachmentHighlightVisible?: boolean

Controls the variable attachment highlight visibility. Default: true

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