Package chemaxon.standardizer.actions

Class ClearStereoAction

java.lang.Object
chemaxon.standardizer.AbstractStandardizerAction
chemaxon.standardizer.actions.ClearStereoAction
All Implemented Interfaces:
chemaxon.license.Licensable, StandardizerAction, PropertyChangeListener, Cloneable, EventListener
@PublicApi public final class ClearStereoAction extends AbstractStandardizerAction
Clear stereo standardizer action
Since:
5.11

  • Field Details

    • TYPE_KEY

      public static final String TYPE_KEY
      Key of type for parsing
      See Also:

    • PROPERTY_KEY_CHIRALITY

      public static final String PROPERTY_KEY_CHIRALITY
      Key of type for property change of mode
      See Also:

    • PROPERTY_KEY_DOUBLE_BOND

      public static final String PROPERTY_KEY_DOUBLE_BOND
      Key of type for property change of mode
      See Also:

    • PROPERTY_KEY_SINGLE_UP_OR_DOWN_BOND

      public static final String PROPERTY_KEY_SINGLE_UP_OR_DOWN_BOND
      Key of type for property change of mode
      See Also:

  • Constructor Details

    • ClearStereoAction

      public ClearStereoAction(Map<String,String> params)
      Initializes the action with parameters
      Parameters:
      params - the parameters of the action

  • Method Details

    • getType

      public String getType()
      Gets the type of the action as string. Used for XML serialization
      Returns:
      the type of the action as string

    • setChirality

      public void setChirality(boolean chirality)
      Sets the chirality value of absolute stereo action
      Parameters:
      chirality - the chirality value of absolute stereo action

    • isChirality

      public boolean isChirality()
      Gets the chirality value of absolute stereo action
      Returns:
      the chirality value of absolute stereo action

    • setDoubleBond

      public void setDoubleBond(boolean doubleBond)
      Sets the double bond value of absolute stereo action
      Parameters:
      doubleBond - the double bond value of absolute stereo action

    • isDoubleBond

      public boolean isDoubleBond()
      Gets the double bond value of absolute stereo action
      Returns:
      the double bond value of absolute stereo action

    • setSingleUpOrDownBond

      public void setSingleUpOrDownBond(boolean singleUpOrDownBond)
      Sets the single wedge value of absolute stereo action
      Parameters:
      singleUpOrDownBond - the single wedge value of absolute stereo action

    • isSingleUpOrDownBond

      public boolean isSingleUpOrDownBond()
      Gets the single wedge value of absolute stereo action
      Returns:
      the single wedge value of absolute stereo action

    • standardize1

      protected Changes standardize1(Molecule molecule)
      Description copied from class: AbstractStandardizerAction
      This method contains the current standardization mechanism. Descendants needs to implement this method.
      Special molecules containing more components (e.g. RgMolecule, RxnMolecule) are decomponented by the method AbstractStandardizerAction.getComponents(Molecule), and AbstractStandardizerAction.standardize1(Molecule) method is called on each component, before applied on the original molecule. If a descendant does not want this to occur, this method must be overridden.
      Logs of standardization should be generated to a Logger, that can be collected by using StandardizerLogger.getLogger() method.
      Specified by:
      standardize1 in class AbstractStandardizerAction
      Parameters:
      molecule - the Molecule instance to be standardized
      Returns:
      the changes applied on the molecule during the standardization process

    • clone

      public ClearStereoAction clone() throws CloneNotSupportedException
      Overrides:
      clone in class AbstractStandardizerAction
      Throws:
      CloneNotSupportedException

    • toString

      public String toString()
      Overrides:
      toString in class AbstractStandardizerAction