Package chemaxon.standardizer.actions

package chemaxon.standardizer.actions

Provides Standardizer actions.

Related Packages

Package	Description
chemaxon.standardizer	Provides the main classes of the Standardizer tool.
chemaxon.standardizer.configuration	Provides classes for handling configurations of Standardizer.

Class	Description
AddExplicitHydrogensAction	Standardizer action that adds explicit hydrogens to the molecule.
AliasToAtomAction	Standardizer action that converts atom aliases to actual atoms.
AliasToGroupAction	Standardizer action that converts atom aliases to abbreviated groups.
AromatizeAction	Standardizer action that aromatizes the molecule.
AromatizeAction.Type	Type of aromatization
Clean2DAction	Standardizer action that cleans the molecule graph in 2D.
Clean2DAction.Type	Type of clean action (partial, full, template based or convert 3D to 2D)
Clean3DAction	Standardizer action that cleans the molecule graph in 3D.
ClearIsotopesAction	Standardizer action that clears isotope information (mass numbers) from atoms.
ClearStereoAction	Standardizer action that clears stereo information from the molecule.
ContractSgroupsAction	Standardizer action that contracts S-groups of the molecule.
ConvertDoubleBondsAction	Standardizer action that converts double bonds to wiggly bonds.
ConvertDoubleBondsAction.Type	Type of conversion
ConvertPiMetalBondsAction	Standardizer action that converts Pi-metal single bonds to standard coordinate bonds.
ConvertToEnhancedStereoAction	Standardizer action that converts stereo information to enhanced stereo representation.
CreateGroupAction	Standardizer action that searches for groups in the molecule and contracts them.
DearomatizeAction	Standardizer action that dearomatizes the molecule.
DisconnectMetalAtomsAction	Standardizer action that disconnects metal atoms from other atoms of the molecule.
ExpandAction	Standardizer action that expands stoichiometry coefficients.
ExpandSgroupsAction	Standardizer action that expands S-groups of the molecule.
GroupDefinition	Pattern of a group.
InvalidStandardizerAction	Implementation of StandardizerAction representing an invalid instance of a standardizer action.
MapAction	Standardizer action that adds atom map numbers to the molecule.
MapReactionAction	Standardizer action that adds atom-atom mapping to the reaction.
MesomerizeAction	Standardizer action that generates the canonical mesomeric form of the molecule.
NeutralizeAction	Standardizer action that neutralizes charged atoms in the molecule.
RearrangeReactionAction	Standardizer action that rearranges reaction components.
RemoveAbsoluteStereoAction	Standardizer action that removes the absolute stereo flag from the molecule.
RemoveAtomValuesAction	Standardizer action that removes atom values from the molecule.
RemoveAttachedDataAction	Standardizer action that removes attached data from the molecule.
RemoveExplicitHydrogensAction	Standardizer action that removes explicit hydrogens from the molecule.
RemoveFragmentAction	Standardizer action that removes fragments from the molecule.
RemoveFragmentAction.Measurement	Type of measurement
RemoveFragmentAction.Method	Type of removal methods
RemoveRGroupDefinitionsAction	Standardizer action that removes R-group definitions from the molecule.
RemoveSolventsAction	Standardizer action that removes common solvents from the molecule.
RemoveStereoCareBoxAction	Standardizer action that removes the stereo care boxes from the bonds in the molecule.
ReplaceAtomsAction	Standardizer action that replaces specified atoms in the molecule.
SetAbsoluteStereoAction	Standardizer action that sets the absolute stereo flag on the molecule.
SetHydrogenIsotopeSymbolAction	Standardizer action that sets hydrogen isotope symbols to be used in the molecule (D/T or 2H/3H).
SetHydrogenIsotopeSymbolAction.Type	Hydrogen isotope representation type
StripSaltsAction	Standardizer action that strips salts from the molecule.
TautomerizeAction	Standardizer action that generates canonical tautomer form of the molecule.
TautomerizeAction.TautomerForm	Tautomer form to be used by TautomerizeAction.
TransformAction	Standardizer action that applies a specified transformation to the molecule.
UngroupSgroupsAction	Standardizer action that ungroups S-groups of the molecule.
UnmapAction	Standardizer action that removes atom map numbers from the molecule.
WedgeCleanAction	Standardizer action that rearranges the wedge bond representations of the molecule.