Constant Field Values
Contents
- chemaxon.calculations.*
- chemaxon.checkers.*
- chemaxon.clustering.*
- chemaxon.core.*
- chemaxon.descriptors.*
- chemaxon.fixers.*
- chemaxon.formats.*
- chemaxon.jchem.*
- chemaxon.jep.*
- chemaxon.license.*
- chemaxon.marvin.*
- chemaxon.naming.*
- chemaxon.pharmacophore.*
- chemaxon.reaction.*
- chemaxon.sss.*
- chemaxon.standardizer.*
- chemaxon.struc.*
- chemaxon.util.*
- com.chemaxon.*
chemaxon.calculations.*
-
chemaxon.calculations.dipole.DipoleResult Modifier and Type Constant Field Value protected static final double
DEBYE_TO_EA
0.20822678
-
chemaxon.calculations.nmr.NMRCalculator Modifier and Type Constant Field Value public static final String
C_SHIFT_PROP_NAME
"13C"
public static final String
H_SHIFT_PROP_NAME
"1H"
-
chemaxon.calculations.stereo.Stereochemistry Modifier and Type Constant Field Value public static final int
EVEN
2
public static final int
ODD
1
chemaxon.checkers.*
-
chemaxon.checkers.AbbreviatedGroupChecker Modifier and Type Constant Field Value public static final String
PROPERTY_KEY_CONTRACTED
"contracted"
public static final String
PROPERTY_KEY_EXCLUDED
"excluded"
public static final String
PROPERTY_KEY_EXPANDED
"expanded"
public static final String
PROPERTY_KEY_SEARCH_CONTRACTED
"searchContracted"
public static final String
PROPERTY_KEY_SEARCH_EXCLUDED
"searchExcluded"
public static final String
PROPERTY_KEY_SEARCH_EXPANDED
"searchExpanded"
-
chemaxon.checkers.AromaticityErrorChecker Modifier and Type Constant Field Value public static final String
PROPERTY_KEY_AROM_TYPE
"aromType"
public static final String
PROPERTY_KEY_TYPE
"type"
-
chemaxon.checkers.AtomQueryPropertyChecker Modifier and Type Constant Field Value public static final String
PROPERTY_KEY_AROMATCITY
"aromaticity"
public static final String
PROPERTY_KEY_AROMATICITY_CHECKING
"aromaticityChecking"
public static final String
PROPERTY_KEY_CONNECTION_COUNT
"connectionCount"
public static final String
PROPERTY_KEY_CONNECTION_COUNT_CHECKING
"conncetionCountChecking"
public static final String
PROPERTY_KEY_EXPLICIT_CONNECTION_COUNT
"explicitConnectionCount"
public static final String
PROPERTY_KEY_EXPLICIT_CONNECTION_COUNT_CHECKING
"explicitConnectionCountChecking"
public static final String
PROPERTY_KEY_HYDROGEN_COUNT
"hydrogenCount"
public static final String
PROPERTY_KEY_HYDROGEN_COUNT_CHECKING
"hydrogenCountChecking"
public static final String
PROPERTY_KEY_IMPLICIT_HYDROGEN_COUNT
"implicitHydrogenCount"
public static final String
PROPERTY_KEY_IMPLICIT_HYDROGEN_COUNT_CHECKING
"implicitHydrogenCountChecking"
public static final String
PROPERTY_KEY_RING_BOND_COUNT
"ringBondCount"
public static final String
PROPERTY_KEY_RING_BOND_COUNT_CHECKING
"ringBondCountChecking"
public static final String
PROPERTY_KEY_RING_COUNT
"ringCount"
public static final String
PROPERTY_KEY_RING_COUNT_CHECKING
"ringCountChecking"
public static final String
PROPERTY_KEY_SMALLEST_RING_SIZE
"smallestRingSize"
public static final String
PROPERTY_KEY_SMALLEST_RING_SIZE_CHECKING
"smallestRingSizeChecking"
public static final String
PROPERTY_KEY_SUBSTITUTION_COUNT
"substitutionCount"
public static final String
PROPERTY_KEY_SUBSTITUTION_COUNT_CHECKING
"substitutionCountChecing"
public static final String
PROPERTY_KEY_UNSATURATION
"unsaturation"
public static final String
PROPERTY_KEY_UNSATURATION_CHECKING
"unsaturationChecking"
-
chemaxon.checkers.AtomTypeChecker Modifier and Type Constant Field Value public static final String
PROPERTY_KEY_TYPES
"types"
-
chemaxon.checkers.AttachedDataChecker Modifier and Type Constant Field Value public static final String
PROPERTY_KEY_EXCLUDED
"excluded"
public static final String
PROPERTY_KEY_IS_EXCLUSION_REGEXP
"isExclusionRegexp"
public static final String
PROPERTY_KEY_SEARCH_EXCLUDED
"searchExcluded"
public static final String
PROPERTY_KEY_SEARCH_WITH_REGEXP_EXCLUSION
"searchWithRegexpExclusion"
-
chemaxon.checkers.ExplicitHydrogenChecker Modifier and Type Constant Field Value public static final String
PROPERTY_KEY_BRIDGEHEAD
"bridgehead"
public static final String
PROPERTY_KEY_CHARGED
"charged"
public static final String
PROPERTY_KEY_H_CONNECTED
"hconnected"
public static final String
PROPERTY_KEY_ISOTOPIC
"isotopic"
public static final String
PROPERTY_KEY_LONELY
"lonely"
public static final String
PROPERTY_KEY_MAPPED
"mapped"
public static final String
PROPERTY_KEY_POLYMER_END_GROUP
"polymerendgroup"
public static final String
PROPERTY_KEY_RADICAL
"radical"
public static final String
PROPERTY_KEY_SEARCH_BRIDGEHEAD
"searchBridgehead"
public static final String
PROPERTY_KEY_SEARCH_CHARGED
"searchCharged"
public static final String
PROPERTY_KEY_SEARCH_H_CONNECTED
"searchHconnected"
public static final String
PROPERTY_KEY_SEARCH_ISOTOPIC
"searchIsotopic"
public static final String
PROPERTY_KEY_SEARCH_LONELY
"searchLonely"
public static final String
PROPERTY_KEY_SEARCH_MAPPED
"searchMapped"
public static final String
PROPERTY_KEY_SEARCH_POLYMER_END_GROUP
"searchPolymerendgroup"
public static final String
PROPERTY_KEY_SEARCH_RADICAL
"searchRadical"
public static final String
PROPERTY_KEY_SEARCH_SGROUP
"searchSgroup"
public static final String
PROPERTY_KEY_SEARCH_SGROUP_END
"searchSgroupend"
public static final String
PROPERTY_KEY_SEARCH_VALENCE_ERROR
"searchValenceerror"
public static final String
PROPERTY_KEY_SEARCH_WEDGED
"searchWedged"
public static final String
PROPERTY_KEY_SGROUP
"sgroup"
public static final String
PROPERTY_KEY_SGROUP_END
"sgroupend"
public static final String
PROPERTY_KEY_VALENCE_ERROR
"valenceerror"
public static final String
PROPERTY_KEY_WEDGED
"wedged"
-
chemaxon.checkers.PseudoAtomChecker Modifier and Type Constant Field Value public static final String
PROPERTY_KEY_EXCLUDED
"excluded"
public static final String
PROPERTY_KEY_SEARCH_EXCLUDED
"searchExcluded"
-
chemaxon.checkers.RatomChecker Modifier and Type Constant Field Value public static final String
PROPERTY_KEY_SEARCH_ALL
"searchAll"
public static final String
PROPERTY_KEY_SEARCH_DISCONNECTED
"searchDisconnected"
public static final String
PROPERTY_KEY_SEARCH_GENERIC
"searchGeneric"
public static final String
PROPERTY_KEY_SEARCH_LINKER
"searchLinker"
public static final String
PROPERTY_KEY_SEARCH_NESTED
"searchNested"
-
chemaxon.checkers.RingStrainErrorChecker Modifier and Type Constant Field Value public static final String
PROPERTY_KEY_DETECT_CUMULATED_DOUBLE_BONDS
"detectCumulatedDoubleBonds"
public static final String
PROPERTY_KEY_DETECT_TRANS_DOUBLE_BONDS
"detectTransDoubleBonds"
public static final String
PROPERTY_KEY_DETECT_TRIPLE_BONDS
"detectTripleBonds"
-
chemaxon.checkers.StructureChecker Modifier and Type Constant Field Value public static final String
PROPERTY_KEY_VALID
"VALID"
-
chemaxon.checkers.StructureCheckerDescriptor Modifier and Type Constant Field Value public static final String
ACTIONSTRING_TOKEN
"actionStringToken"
public static final String
CUSTOM_NAME
"customName"
public static final String
DESCRIPTION
"description"
public static final String
EDITOR_CLASS_NAME
"editorClassName"
public static final String
FIX_MODE
"fixMode"
public static final String
FIXER_CLASS_NAME
"fixerClassName"
public static final String
HELP_TEXT
"helpText"
public static final String
ICON_PATH
"iconPath"
public static final String
LOCAL_MENU_NAME
"localMenuName"
public static final String
MORE_ERROR_MESSAGE
"moreErrorMessage"
public static final String
NAME
"name"
public static final String
NO_ERROR_MESSAGE
"noErrorMessage"
public static final String
ONE_ERROR_MESSAGE
"oneErrorMessage"
public static final String
SEVERITY
"severity"
-
chemaxon.checkers.StructureCheckerFactory Modifier and Type Constant Field Value public static final String
CHECKERCONFIG_XML
"checkerconfig.xml"
public static final String
DEFAULT
"default"
public static final String
DEFAULT_CONFIGURATION_PATH
"/chemaxon/checkers/resource/defaultcheckerconfig.xml"
public static final String
DEFAULT_CONFIGURATION_SCHEMA
"/chemaxon/checkers/resource/checkerconfig.xsd"
public static final String
USER_DEFINED_CHECKERCONFIG_XML
"userdefinedcheckers.xml"
-
chemaxon.checkers.StructureCheckerHelper Modifier and Type Constant Field Value public static final double
MAXIMAL_DISTANCE_LIMIT
1.8479999999999999
public static final double
MINIMAL_ATOM_DISTANCE_LIMIT
0.6160000000000001
public static final double
MINIMAL_DISTANCE_LIMIT
0.9239999999999999
-
chemaxon.checkers.ValenceErrorChecker Modifier and Type Constant Field Value public static final String
PROPERTY_KEY_TRADITIONAL_N_ALLOWED
"allowTraditionalNitrogen"
-
chemaxon.checkers.ValencePropertyChecker Modifier and Type Constant Field Value public static final String
PROPERTY_KEY_DEFAULT_VALENCE
"defaultValence"
public static final String
PROPERTY_KEY_NON_DEFAULT_VALENCE
"nonDefaultValence"
public static final String
PROPERTY_KEY_SEARCH_DEFAULT_VALENCE
"searchDefaultValence"
public static final String
PROPERTY_KEY_SEARCH_NON_DEFAULT_VALENCE
"searchNonDefaultValence"
-
chemaxon.checkers.result.ConvertConstants Modifier and Type Constant Field Value public static final String
ATOM_ATOM_MAP
"atomAtomMap"
public static final String
BOND_BOND_MAP
"bondBondMap"
public static final String
SGROUP_SGROUP_MAP
"sgroupSgroupMap"
-
chemaxon.checkers.runner.configuration.reader.ConfigurationReader Modifier and Type Constant Field Value public static final String
DEFAULT_CHECKERS_CONFIG_PATH
"/chemaxon/marvin/sketch/swing/modules/checker/resources/default.xml"
public static final String
DEFAULT_USER_CHECKER_FILENAME
"checkerconfig.xml"
-
chemaxon.checkers.runner.configuration.reader.XMLBasedConfigurationReader Modifier and Type Constant Field Value public static final String
DEFAULT_CONFIGURATION_SCHEMA
"/chemaxon/checkers/runner/configuration/reader/resource/checkerconfiguration.xsd"
chemaxon.clustering.*
-
chemaxon.clustering.LibraryMCS Modifier and Type Constant Field Value public static final int
ATOM_COUNT_UPPER_BOUND
50
public static final int
DEFAULT_ALLOWED_LEVEL_COUNT
10
public static final boolean
DEFAULT_ATOM_TYPE_MATCH
true
public static final boolean
DEFAULT_BOND_TYPE_MATCH
true
public static final boolean
DEFAULT_CHARGE_MATCH
true
public static final boolean
DEFAULT_ISOTOPE_MATCH
true
public static final boolean
DEFAULT_KEEP_RINGS_MODE
true
public static final int
DEFAULT_MIN_MCS_SIZE
9
public static final boolean
DEFAULT_RADICAL_MATCH
true
public static final int
DEFAULT_REQUIRED_CLUSTER_COUNT
1
public static final int
MAX_LEVEL_COUNT
100
public static final int
TERMINATION_CANCEL
5
public static final int
TERMINATION_CLUSTER_COUNT
3
public static final int
TERMINATION_ERROR
1
public static final int
TERMINATION_LEVEL_COUNT
2
public static final int
TERMINATION_MCS_SIZE_LIMIT
4
public static final int
TERMINATION_SAME_PARAMETERS
6
public static final int
TERMINATION_STEP_NOT_ALLOWED
7
public static final int
TERMINATION_UNKNOWN
0
-
chemaxon.clustering.Ward Modifier and Type Constant Field Value public static final int
ONLY_CLUSTERING
2
public static final int
ONLY_RNN
1
public static final int
RNN_AND_CLUSTERING
0
chemaxon.core.*
-
chemaxon.core.ChemConst Modifier and Type Constant Field Value public static final int
Ac
89
public static final int
Ag
47
public static final int
Al
13
public static final int
Am
95
public static final int
Ar
18
public static final int
As
33
public static final int
At
85
public static final int
Au
79
public static final int
B
5
public static final int
Ba
56
public static final int
Be
4
public static final int
Bh
107
public static final int
Bi
83
public static final int
Bk
97
public static final int
Br
35
public static final int
C
6
public static final int
Ca
20
public static final int
Cd
48
public static final int
Ce
58
public static final int
Cf
98
public static final int
Cl
17
public static final int
Cm
96
public static final int
Cn
112
public static final int
Co
27
public static final int
Cr
24
public static final int
Cs
55
public static final int
Cu
29
public static final int
Db
105
public static final int
Ds
110
public static final int
Dy
66
public static final int
ELEMENT_COUNT
118
public static final int
Er
68
public static final int
Es
99
public static final int
Eu
63
public static final int
F
9
public static final int
Fe
26
public static final int
Fl
114
public static final int
Fm
100
public static final int
Fr
87
public static final int
Ga
31
public static final int
Gd
64
public static final int
Ge
32
public static final int
H
1
public static final int
He
2
public static final int
Hf
72
public static final int
Hg
80
public static final int
Ho
67
public static final int
Hs
108
public static final int
I
53
public static final int
In
49
public static final int
Ir
77
public static final int
K
19
public static final int
Kr
36
public static final int
La
57
public static final int
Li
3
public static final int
Lr
103
public static final int
Lu
71
public static final int
Lv
116
public static final int
Mc
115
public static final int
Md
101
public static final int
Mg
12
public static final int
Mn
25
public static final int
Mo
42
public static final int
Mt
109
public static final int
N
7
public static final int
Na
11
public static final int
Nb
41
public static final int
Nd
60
public static final int
Ne
10
public static final int
Nh
113
public static final int
Ni
28
public static final int
No
102
public static final int
Np
93
public static final int
O
8
public static final int
Og
118
public static final int
Os
76
public static final int
P
15
public static final int
Pa
91
public static final int
Pb
82
public static final int
Pd
46
public static final int
Pm
61
public static final int
Po
84
public static final int
Pr
59
public static final int
Pt
78
public static final int
Pu
94
public static final int
Ra
88
public static final int
Rb
37
public static final int
Re
75
public static final int
Rf
104
public static final int
Rg
111
public static final int
Rh
45
public static final int
Rn
86
public static final int
Ru
44
public static final int
S
16
public static final int
Sb
51
public static final int
Sc
21
public static final int
Se
34
public static final int
Sg
106
public static final int
Si
14
public static final int
Sm
62
public static final int
Sn
50
public static final int
Sr
38
public static final int
Ta
73
public static final int
Tb
65
public static final int
Tc
43
public static final int
Te
52
public static final int
Th
90
public static final int
Ti
22
public static final int
Tl
81
public static final int
Tm
69
public static final int
Ts
117
public static final int
U
92
public static final int
V
23
public static final int
W
74
public static final int
Xe
54
public static final int
Y
39
public static final int
Yb
70
public static final int
Zn
30
public static final int
Zr
40
-
chemaxon.core.util.BondTable Modifier and Type Constant Field Value public static final int
DEFAULT_VALUE
-1
chemaxon.descriptors.*
-
chemaxon.descriptors.CDParameters Modifier and Type Constant Field Value public static final int
BINARY_DESCRIPTOR
0
public static final int
FLOAT_DESCRIPTOR
2
public static final int
INTEGER_DESCRIPTOR
1
-
chemaxon.descriptors.CFParameters Modifier and Type Constant Field Value public static final int
DEFAULT_BITS_SET
2
public static final int
DEFAULT_BOND_COUNT
7
public static final int
DEFAULT_LENGTH
1024
-
chemaxon.descriptors.ECFPParameters Modifier and Type Constant Field Value public static final int
DEFAULT_DIAMETER
4
public static final int
DEFAULT_LENGTH
1024
-
chemaxon.descriptors.MDHypothesisCreator Modifier and Type Constant Field Value public static final String
defaultTypeName
"Minimum"
-
chemaxon.descriptors.MDParameters Modifier and Type Constant Field Value public static final float
DEFAULT_ASYMMETRY_FACTOR
0.0f
public static final int
DEFAULT_OUTPUT_PRECISION
2
public static final float
DEFAULT_SCALE_FACTOR
1.0f
public static final float
DEFAULT_WEIGHT
1.0f
-
chemaxon.descriptors.MetricsType Modifier and Type Constant Field Value public static final String
SEPARATOR
":"
-
chemaxon.descriptors.PFParameters Modifier and Type Constant Field Value public static final float
DEFAULT_FUZZINESS_FACTOR
1.0f
public static final float
DEFAULT_FUZZY_CUTOFF
10.0f
public static final int
DEFAULT_FUZZY_LOWER_BOUND
1
public static final int
DEFAULT_RESOLUTION
1
public static final String
DEFAULT_XML_CONFIG
"<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n<!-- Pharmacophore configuration file -->\n<PharmacophoreFingerprintConfiguration Version =\"0.3\" schemaLocation=\"pharmacophores.xsd\">\n <PharmacophoreDefinition>\n <Search StereoCareChecking=\"false\"/>\n <Mols>\n <Mol ID=\"pos\" Structure=\"[*+]\"/>\n <Mol ID=\"nitro\" Structure=\"[O:2]~[N:1]=[O:3]\"/>\n <Mol ID=\"amine\" Structure=\"C[N:1]\"/>\n <Mol ID=\"tertamine\" Structure=\"C[N:1](C)C\"/>\n <Mol ID=\"aniline\" Structure=\"c[N:1]\"/>\n <Mol ID=\"amide\" Structure=\"[#7:1][C,P,S:2]=O\"/>\n <Mol ID=\"hydrazine\" Structure=\"NN\"/>\n <Mol ID=\"phenylhydrazine\" Structure=\"c[N:1][N:2]\"/>\n <Mol ID=\"hydrazide\" Structure=\"[#7:1]NC=O\"/>\n <Mol ID=\"amidine\" Structure=\"[#7:2][C,P,S:1]=[N:3]\"/>\n <Mol ID=\"neg\" Structure=\"[*-]\"/>\n <Mol ID=\"carbox\" Structure=\"[H][O:3][C:1]=[O:2]\"/>\n <Mol ID=\"carboxylate\" Structure=\"[O-3][C:1]=[O:2]\"/>\n <Mol ID=\"sulfonyl\" Structure=\"[H][O:3][S:1](=[O:2])=[O:4]\"/>\n <Mol ID=\"sulfonate\" Structure=\"[O-:3][S:1](=[O:4])=[O:2]\"/>\n <Mol ID=\"phosphonyl\" Structure=\"[H][O:4][P:1]([O:2])=[O:3]\"/>\n <Mol ID=\"phosphonate\" Structure=\"[O:4][P:1]([O-:2])=[O:3]\"/>\n <Mol ID=\"arom\" Structure=\"[*;a]\"/>\n <Mol ID=\"cx\" Structure=\"[C,F,Cl,Br,I,At]\"/>\n <Mol ID=\"nos\" Structure=\"[#7,#8,#16]\"/>\n <Mol ID=\"pyr\" Structure=\"[nX3]\"/>\n <Mol ID=\"qh\" Structure=\"[!#1!#6:1][H]\"/>\n </Mols>\n <Pharmacophores>\n <AtomSet ID=\"Aromatic\" Symbol=\"r\">arom</AtomSet>\n <AtomSet ID=\"Cationic\" Symbol=\"+\">\n <![CDATA[ !neg && ((pos && !nitro:1) || ((amine:1 || hydrazine || amidine:2,3) && !(tertamine:1 || amide:1 || nitro:1 || aniline:1 || phenylhydrazine:2))) ]]>\n </AtomSet>\n <AtomSet ID=\"Anionic\" Symbol=\"-\">\n <![CDATA[ !pos && ((neg && !nitro:2,3) || carbox:2,3 || carboxylate:2,3 || sulfonyl:2,3,4 || sulfonate || phosphonyl:2,3,4 || phosphonate) ]]>\n </AtomSet>\n <AtomSet ID=\"HydrogenBondDonor\" Symbol=\"d\">\n <![CDATA[ qh:1 || tertamine:1 && !{Anionic}]]>\n </AtomSet>\n <AtomSet ID=\"HydrogenBondAcceptor\" Symbol=\"a\">\n <![CDATA[ nos && !tertamine:1 && !pyr && !amide:1,2 && !aniline:1 && !sulfonyl:1 && !sulfonate:1 && !{Cationic} && !nitro:1 ]]>\n </AtomSet>\n <AtomSet ID=\"Hydrophobic\" Symbol=\"h\">\n <![CDATA[ cx && !{Aromatic} && !{Cationic} && !{Anionic} && !{HydrogenBondDonor} && !{HydrogenBondAcceptor} ]]>\n </AtomSet>\n </Pharmacophores>\n <PharmacophoreFingerprintParameters MinimalDistance=\"1\" MaximalDistance=\"10\" />\n </PharmacophoreDefinition>\n <StandardizerConfiguration Version =\"0.1\">\n <Actions> \n <Removal ID=\"keepOne\" Method=\"keepLargest\" Measure=\"molMass\"/>\n <Action ID=\"aromatize\" Act=\"aromatize\"/>\n </Actions>\n </StandardizerConfiguration>\n <ScreeningConfiguration>\n <PharmacophorePointColors>\n <Color Symbol=\"+\" Value=\"red\"/>\n <Color Symbol=\"-\" Value=\"blue\"/>\n <Color Symbol=\"r\" Value=\"green\"/>\n <Color Symbol=\"h\" Value=\"black\"/>\n <Color Symbol=\"d\" Value=\"navy\"/>\n <Color Symbol=\"a\" Value=\"maroon\"/>\n <Color Symbol=\"a/d\" Value=\"purple\"/>\n <Color Symbol=\"+/d\" Value=\"lime\"/>\n <Color Symbol=\"-/a\" Value=\"aqua\"/>\n <Color Symbol=\"empty\" Value=\"gray\"/>\n <Color Symbol=\"other\" Value=\"fuchsia\"/>\n </PharmacophorePointColors> \n <ParametrizedMetrics>\n <ParametrizedMetric Name=\"Tanimoto\" ActiveFamily=\"Generic\" \n Metric=\"Tanimoto\" Threshold=\"0.2\"/>\n <ParametrizedMetric Name=\"Euclidean\" ActiveFamily=\"Generic\" \n Metric=\"Euclidean\" Threshold=\"15\" />\n <ParametrizedMetric Name=\"Tversky\" ActiveFamily=\"Generic\"\n Metric=\"Tversky\" Threshold=\"0.5\" TverskyAlpha=\"1\" TverskyBeta=\"1\"/>\n <ParametrizedMetric Name=\"UnityTversky\" ActiveFamily=\"Generic\"\n Metric=\"Tversky\" Threshold=\"0.5\" TverskyAlpha=\"0.\" TverskyBeta=\"0.\"/>\n </ParametrizedMetrics>\n </ScreeningConfiguration>\n</PharmacophoreFingerprintConfiguration>\n"
-
chemaxon.descriptors.RFParameters Modifier and Type Constant Field Value public static final int
DEFAULT_BITS_SET
2
public static final int
DEFAULT_BOND_COUNT
6
public static final int
DEFAULT_LENGTH
2048
-
chemaxon.descriptors.scalars.HBParameters Modifier and Type Constant Field Value public static final int
DEFAULT_PH
7
-
chemaxon.descriptors.scalars.LDParameters Modifier and Type Constant Field Value public static final int
DEFAULT_LOWER_BOUND
0
public static final int
DEFAULT_PH
7
public static final int
DEFAULT_STEP_SIZE
1
public static final int
DEFAULT_UPPER_BOUND
14
chemaxon.fixers.*
-
chemaxon.fixers.StructureFixerDescriptor Modifier and Type Constant Field Value public static final String
ACTIONSTRING_TOKEN
"actionStringToken"
public static final int
DEFAULT_PRIORITY
50
public static final String
DESCRIPTION
"description"
public static final int
HIGH_PRIORITY
75
public static final int
HIGHEST_PRIORITY
2147483647
public static final int
LOW_PRIORITY
25
public static final int
LOWEST_PRIORITY
-2147483647
public static final String
NAME
"name"
public static final String
PRIORITY
"priority"
-
chemaxon.fixers.StructureFixerFactory Modifier and Type Constant Field Value public static final String
FIXERFACTORYCONFIG_XML
"fixerfactoryconfig.xml"
chemaxon.formats.*
-
chemaxon.formats.MFileFormat Modifier and Type Constant Field Value public static final long
F_ARCHIVE
128L
public static final long
F_BINARY
8L
public static final long
F_COORDS
1024L
public static final long
F_EXPORT
1L
public static final long
F_GRAPHICS
256L
public static final long
F_IMAGE
512L
public static final long
F_IMPORT
2L
public static final long
F_MIXED
8192L
public static final long
F_MOLECULE
32L
public static final long
F_MULTIPLE_RECORDS_LEGAL
2048L
public static final long
F_MULTIPLE_RECORDS_POSSIBLE
4096L
public static final long
F_OBJECT
16L
public static final long
F_REACTION
64L
public static final long
F_RECOGNIZER
4L
public static final long
F_SINGLE_LINE
65536L
public static final long
F_USER_DEFINED
32768L
public static final long
F_XML
16384L
-
chemaxon.formats.MFileFormatUtil Modifier and Type Constant Field Value public static final int
MOLMOVIE
2
public static final int
MULTISET
1
public static final int
NOMOLMOVIE
4
-
chemaxon.formats.MolExporter Modifier and Type Constant Field Value public static final int
C_CLOSE_STREAM
1
public static final int
C_FLUSH_STREAM
2
public static final int
MULTIPLE
2
public static final int
TEXT
1
-
chemaxon.formats.recognizer.AbbrevGroupRecognizer Modifier and Type Constant Field Value public static final int
CAN_BE
1
public static final int
NO
0
public static final int
SURE
2
-
chemaxon.formats.recognizer.PDBRecognizer Modifier and Type Constant Field Value public static final int
CAN_BE
1
public static final int
NO
0
public static final int
SURE
2
chemaxon.jchem.*
-
chemaxon.jchem.db.CacheRegistrationUtil Modifier and Type Constant Field Value public static final String
CACHE_REGISTRATION_SENSITIVITY_EXCEPTION
"EXCEPTION"
public static final String
CACHE_REGISTRATION_SENSITIVITY_LOG
"LOG"
public static final String
CACHE_REGISTRATION_SENSITIVITY_NONE
"NONE"
public static final String
PROP_CACHE_REGISTRATION_SENSITIVITY
"cache.registration_sensitivity"
-
chemaxon.jchem.db.DatabaseConstants Modifier and Type Constant Field Value public static final int
ACCESS
4
public static final String
ACCESS_DRIVER
"sun.jdbc.odbc.JdbcOdbcDriver"
public static final String
ACCESS_TYPE_NAME
"ACCESS"
public static final String
ACCESS_URL_EXAMPLE
"jdbc:odbc:mydatasource"
public static final String
ACCESS_URL_TEMPLATE
"jdbc:odbc[:odbc data source][;options]"
public static final int
COMPOSITE
10
public static final String
COMPOSITE_DRIVER
"cs.jdbc.driver.CompositeDriver"
public static final String
COMPOSITE_TYPE_NAME
"COMPOSITE"
public static final String
COMPOSITE_URL_EXAMPLE
"jdbc:compositesw:[email protected]:9401?domain=composite&dataSource=virtualdb"
public static final String
COMPOSITE_URL_TEMPLATE
"jdbc:compositesw:[email protected][host][:port]?domain=<domain name>&dataSource=<database>"
public static final int
DB2
6
public static final String
DB2_DRIVER
"com.ibm.db2.jcc.DB2Driver"
public static final String
DB2_TYPE_NAME
"DB2"
public static final String
DB2_URL_EXAMPLE
"jdbc:db2://localhost:50000/mydb"
public static final String
DB2_URL_TEMPLATE
"jdbc:db2://[host][:port]/<database>"
public static final int
DEFAULT_BATCH_SIZE
30
public static final int
DEFAULT_COMMIT_INTERVAL
50
public static final int
DERBY
9
public static final String
DERBY_DRIVER
"org.apache.derby.jdbc.EmbeddedDriver"
public static final String
DERBY_TYPE_NAME
"APACHE DERBY"
public static final String
DERBY_URL_EXAMPLE
"jdbc:derby:/c:/databases/mydb;create=true"
public static final String
DERBY_URL_TEMPLATE
"jdbc:derby:[subprotocol]:<database with path>[;create=true][;options]"
public static final int
HSQLDB
8
public static final String
HSQLDB_DRIVER
"org.hsqldb.jdbcDriver"
public static final String
HSQLDB_TYPE_NAME
"HSQL"
public static final String
HSQLDB_URL_EXAMPLE
"jdbc:hsqldb:hsql://localhost/"
public static final String
HSQLDB_URL_TEMPLATE
"jdbc:hsqldb:hsql://[host][:port]/[database]"
public static final int
INTERBASE
5
public static final String
INTERBASE_DRIVER
"interbase.interclient.Driver"
public static final String
INTERBASE_TYPE_NAME
"INTERBASE"
public static final String
INTERBASE_URL_EXAMPLE
"jdbc:interbase://localhost/c:/interbase/interbasedb.gdb"
public static final String
INTERBASE_URL_TEMPLATE
"jdbc:interbase:<path to interbase data file (.gdb file)>"
public static final int
MSSQL
2
public static final String
MSSQL_DRIVER
"com.microsoft.jdbc.sqlserver.SQLServerDriver"
public static final String
MSSQL_URL_EXAMPLE
"jdbc:microsoft:sqlserver://localhost:1433;DatabaseName=mydb;selectMethod=cursor"
public static final String
MSSQL_URL_TEMPLATE
"jdbc:microsoft:sqlserver://[host][:port][;databaseName=database][;options]"
public static final int
MSSQL2005
2
public static final String
MSSQL2005_DRIVER
"com.microsoft.sqlserver.jdbc.SQLServerDriver"
public static final String
MSSQL2005_TYPE_NAME
"MICROSOFT SQL SERVER"
public static final String
MSSQL2005_URL_EXAMPLE
"jdbc:sqlserver://localhost:1433;databaseName=mydb;selectMethod=cursor"
public static final String
MSSQL2005_URL_TEMPLATE
"jdbc:sqlserver://[host][:port][;databaseName=database][;options]"
public static final int
MYSQL
3
public static final String
MYSQL_DRIVER
"org.mariadb.jdbc.Driver"
public static final String
MYSQL_TYPE_NAME
"MYSQL"
public static final String
MYSQL_URL_EXAMPLE
"jdbc:mysql://localhost:3306/mydb?useCursorFetch=true&defaultFetchSize=1000"
public static final String
MYSQL_URL_TEMPLATE
"jdbc:mysql://[host][:port]/<database>[?options]"
public static final int
ORACLE
1
public static final String
ORACLE_DRIVER
"oracle.jdbc.OracleDriver"
public static final String
ORACLE_TYPE_NAME
"ORACLE"
public static final String
ORACLE_URL_EXAMPLE
"jdbc:oracle:thin:@localhost:1521:XE"
public static final String
ORACLE_URL_TEMPLATE
"jdbc:oracle:thin:@[host][:port]:<SID>"
public static final String
POSGRESQL_DRIVER
"org.postgresql.Driver"
public static final String
POSGRESQL_URL_EXAMPLE
"jdbc:postgresql://localhost:5432/mydb"
public static final String
POSGRESQL_URL_TEMPLATE
"jdbc:postgresql://[host][:port]/<database>"
public static final int
POSTGRESQL
7
public static final String
POSTGRESQL_TYPE_NAME
"POSTGRESQL"
public static final int
UNKNOWN
0
public static final String
UNKNWON_TYPE_NAME
"UNKNOWN"
-
chemaxon.jchem.db.DatabaseProperties Modifier and Type Constant Field Value public static final String
DEFAULT_PROPERTY_TABLE
"JChemProperties"
public static final String
MD_PROPERTY_PREFIX
"MD"
public static final String
NAME_COLUMN
"prop_name"
public static final String
PROP_READONLY_DATABASE_NAME
"database.isreadonly"
public static final String
VALUE_COLUMN
"prop_value"
public static final String
VALUE_COLUMN_EXT
"prop_value_ext"
-
chemaxon.jchem.db.JChemSearch Modifier and Type Constant Field Value public static final int
APPEND_TO_RESULT_TABLE
2
public static final int
CREATE_OR_REPLACE_RESULT_TABLE
1
public static final int
MAXIMAL_ACCEPTEDSEARCHTIME_MINUTES
10
public static final int
NO_ORDERING
0
public static final int
NO_RESULT_TABLE
0
public static final int
ORDERING_BY_FILTER_ID_LIST
3
public static final int
ORDERING_BY_ID
1
public static final int
ORDERING_BY_ID_OR_SIMILARITY
2
public static final int
RUN_MODE_ASYNCH_COMPLETE
1
public static final int
RUN_MODE_ASYNCH_PROGRESSIVE
2
public static final int
RUN_MODE_SYNCH_COMPLETE
0
-
chemaxon.jchem.db.MDTableHandler Modifier and Type Constant Field Value public static final String
MD_PROPERTY_COMMENT
"Comment"
public static final String
MD_PROPERTY_CONF_PREFIX
"CONF"
public static final String
MD_PROPERTY_SETTINGS
"Settings"
public static final String
MD_PROPERTY_TYPE
"Type"
public static final String
MD_PROPERTY_UPDATE
"UpdateOnInsert"
-
chemaxon.jchem.db.RegenerationChecker Modifier and Type Constant Field Value public static final String
ATTR_OPERATION
"operation"
public static final String
GET_TABLE_COLUMN_DATA_SQL
"SELECT * FROM [TABLENAME] WHERE 1=2"
public static final String
OPER_EQUALS
"eq"
public static final String
OPER_NOT_EQUALS
"noteq"
public static final String
TAG_CONDITION
"condition"
public static final String
TAG_CT
"ct"
public static final String
TAG_FULL
"full"
public static final String
TAG_MD
"md"
public static final String
TAG_NOCT
"noct"
public static final String
TAG_PROPERTY
"property"
public static final String
TAG_PROPERTY_NAME
"name"
public static final String
TAG_PROPERTY_VALUE
"value"
-
chemaxon.jchem.db.RegenerationConstants Modifier and Type Constant Field Value public static final int
REGENERATION_MODE_NORMAL
0
public static final int
REGENERATION_MODE_NOT_PRECALCULATED
2
public static final int
REGENERATION_MODE_PRECALCULATION
1
public static final int
REGENERATION_TYPE_ANY
4
public static final int
REGENERATION_TYPE_CT
1
public static final int
REGENERATION_TYPE_FULL
0
public static final int
REGENERATION_TYPE_MD
3
public static final int
REGENERATION_TYPE_NONE
-1
public static final int
REGENERATION_TYPE_WITHOUT_CT
2
public static final int
TABLE_VERSION_NEWER
2
public static final int
TABLE_VERSION_OK
0
public static final int
TABLE_VERSION_OLDER
1
-
chemaxon.jchem.db.TableTypeConstants Modifier and Type Constant Field Value public static final int
MYSQL_DEFAULT_TABLE_TYPE
0
public static final int
MYSQL_FORCE_INNO_DB
1
public static final int
MYSQL_FORCE_MYISAM
2
public static final int
TABLE_TYPE_ANY_STRUCTURES
2
public static final int
TABLE_TYPE_DEFAULT
0
public static final String
TABLE_TYPE_IS_NOT_SUPPORTED
"This table type is not allowed for MS Access"
public static final int
TABLE_TYPE_MARKUSH_LIBRARIES
3
public static final int
TABLE_TYPE_MOLECULES
0
public static final int
TABLE_TYPE_QUERY_STRUCTURES
4
public static final int
TABLE_TYPE_REACTIONS
1
-
chemaxon.jchem.db.UpdateHandler Modifier and Type Constant Field Value public static final int
DUPLICATE_FILTERING_OFF
2
public static final int
DUPLICATE_FILTERING_ON
1
public static final int
DUPLICATE_FILTERING_TABLE_OPTION
0
public static final int
INSERT
1
public static final int
INSERT_WITH_ID
2
public static final int
QUERY_TABLE_ENUMERATION_LIMIT
500
public static final int
UPDATE
0
-
chemaxon.jchem.file.ProgressWriter Modifier and Type Constant Field Value public static final int
ERROR
0
public static final int
INFO
2
public static final int
WARNING
1
chemaxon.jep.*
-
chemaxon.jep.ChemJEP Modifier and Type Constant Field Value public static final int
FALSE
0
public static final int
TRUE
1
public static final int
UNDECIDED
2
-
chemaxon.jep.Evaluator Modifier and Type Constant Field Value public static final String
CONFIG_DIR
"config"
public static final String
DEFAULT_TAG_NAME
"CALC"
public static final String
EVALUATOR_DEFAULTS_FILE
"evaluator.xml"
public static final String
EVALUATOR_NAMED_MOLS_FILE
"mols.smarts"
public static final String
EVALUATOR_SCRIPT_FILE
"jep.script"
-
chemaxon.jep.context.ReactionContext Modifier and Type Constant Field Value public static final String
AATOM
"aatom"
public static final String
AGENT
"agent"
public static final String
PATOM
"patom"
public static final String
PRODUCT
"product"
public static final String
RATOM
"ratom"
public static final String
REACTANT
"reactant"
chemaxon.license.*
-
chemaxon.license.LicenseManager Modifier and Type Constant Field Value public static final String
ALIGNMENT
"3D Alignment"
public static final String
CALCULATIONS_PACK
"Calculations Pack"
public static final String
CARTRIDGE
"JChem Cartridge"
public static final String
CHARGE_PLUGIN_GROUP
"Charge Plugin Group"
public static final String
CHEM_CURATOR_COMPOUND
"ChemCurator Compound"
public static final String
CHEM_CURATOR_FULL
"ChemCurator Full"
public static final String
CHEMLOCATOR_PERSONAL
"ChemLocator Personal"
public static final String
CHEMLOCATOR_SERVER
"ChemLocator Server"
public static final String
CONFORMATION_PLUGIN_GROUP
"Conformation Plugin Group"
public static final String
DOCUMENT_TO_STRUCTURE
"Document to Structure"
public static final String
ECFP_FCFP
"ECFP/FCFP"
public static final String
FRAGMENTER
"Fragmenter"
public static final String
GEOMETRY_PLUGIN_GROUP
"Geometry Plugin Group"
public static final String
HBDA_PLUGIN
"HBDA Plugin"
public static final String
HUCKEL_ANALYSIS_PLUGIN
"Huckel Analysis Plugin"
public static final String
INSTANT_JCHEM
"Instant JChem"
public static final String
INSTANT_JCHEM_PIVOTING
"Instant JChem Pivoting"
public static final String
INSTANT_JCHEM_SERVER
"Instant JChem Server"
public static final String
INSTANT_JCHEM_VIZ
"Instant JChem VIZ"
public static final String
ISOMERS_PLUGIN_GROUP
"Isomers Plugin Group"
public static final String
JCHEM
"JChem Base"
public static final String
JCHEM_FOR_EXCEL
"JChem for Excel"
public static final String
JCHEM_FOR_OFFICE
"JChem for Office"
public static final String
JCHEM_FOR_SHAREPOINT
"JChem for SharePoint"
public static final String
JCHEM_FOR_SHAREPOINT_SEARCH
"JChem for SharePoint Search"
public static final String
JKLUSTOR
"JKlustor"
public static final String
MARKUSH_EDITOR
"Markush Editor"
public static final String
MARKUSH_ENUM_PLUGIN
"Markush Enumeration Plugin"
public static final String
MARKUSH_SEARCH
"Markush Search"
public static final String
MARVIN_APPLETS
"Marvin Applets"
public static final String
MARVIN_BEANS
"Marvin Beans"
public static final String
MCES
"MCES"
public static final String
METABOLIZER
"Metabolizer"
public static final String
MOLECULAR_DESCRIPTORS
"Molecular Descriptors"
public static final String
NAME_TO_STRUCTURE
"Name to Structure"
public static final String
NMR
"NMR Predictor"
public static final String
PARTITIONING_PLUGIN_GROUP
"Partitioning Plugin Group"
public static final String
PLEXUS
"Plexus"
public static final String
PLEXUS_CONNECT
"Plexus Connect"
public static final String
POSTGRES_CARTRIDGE
"Postgres Cartridge"
public static final String
PREDICTOR_PLUGIN
"Predictor Plugin"
public static final String
PROTONATION_PLUGIN_GROUP
"Protonation Plugin Group"
public static final String
REACTOR
"Reactor"
public static final String
REFRACTIVITY_PLUGIN
"Refractivity Plugin"
public static final String
REGISTRATION_SYSTEM
"Registration System"
public static final String
SCREEN
"Screen"
public static final String
SCREEN3D
"3D Screen"
public static final String
STANDARDIZER
"Standardizer"
public static final String
STRUCTURAL_FRAMEWORKS_PLUGIN
"Structural Frameworks Plugin"
public static final String
STRUCTURE_CHECKER
"Structure Checker"
public static final String
STRUCTURE_TO_NAME
"Structure to Name"
public static final String
WEB_SERVICES_SERVER
"Web Services Server"
chemaxon.marvin.*
-
chemaxon.marvin.alignment.MinMaxDistance Modifier and Type Constant Field Value public static final double
WEIGHT
1.0
-
chemaxon.marvin.alignment.Pharmacophore3D Modifier and Type Constant Field Value public static final int
ACCP
4
public static final int
ALIPHATIC_RINGCENTER
1024
public static final int
ANCHOR
2048
public static final int
AROMATIC_ATOM
8
public static final int
AROMATIC_RINGCENTER
512
public static final int
DONR
1
public static final int
H
256
public static final int
HYDR
16
public static final int
LP
128
public static final int
NEG
64
public static final int
POS
32
-
chemaxon.marvin.beans.MSketchPane Modifier and Type Constant Field Value public static final int
SM_ATOM
2
public static final int
SM_BOND
3
public static final int
SM_DELETE
1
public static final int
SM_FLAGS_OFF
8
public static final int
SM_MASK
255
public static final int
SM_SELECT
0
public static final int
SM_SELECT_LASSO
4
-
chemaxon.marvin.beans.MViewPane Modifier and Type Constant Field Value public static final int
EDITABLE
1
public static final int
SKETCHABLE
2
public static final int
VIEW_ONLY
0
-
chemaxon.marvin.calculations.AlignmentPlugin Modifier and Type Constant Field Value public static final int
STEP_DEFAULT
2000
-
chemaxon.marvin.calculations.ConformerPlugin Modifier and Type Constant Field Value public static final int
OPTIMIZATION_NORMAL
1
public static final int
OPTIMIZATION_STRICT
2
public static final int
OPTIMIZATION_VERY_LOOSE
0
public static final int
OPTIMIZATION_VERY_STRICT
3
-
chemaxon.marvin.calculations.HBDAPlugin Modifier and Type Constant Field Value public static final String
ACCEPTOR_SIGN
"A"
public static final String
DONOR_SIGN
"D"
public static final double
EPSILON
0.1
-
chemaxon.marvin.calculations.IsoelectricPointPlugin Modifier and Type Constant Field Value public static final String
TYPE_DISTR
"chargedistr"
-
chemaxon.marvin.calculations.logDPlugin Modifier and Type Constant Field Value public static final int
METHOD_KLOP
2
public static final int
METHOD_PHYS
3
public static final int
METHOD_USER_DEFINED
4
public static final int
METHOD_VG
1
public static final int
METHOD_WEIGHTED
5
-
chemaxon.marvin.calculations.logPPlugin Modifier and Type Constant Field Value public static final int
METHOD_KLOP
2
public static final int
METHOD_PHYS
3
public static final int
METHOD_USER_DEFINED
4
public static final int
METHOD_VG
1
public static final int
METHOD_WEIGHTED
5
-
chemaxon.marvin.calculations.MarkushEnumerationPlugin Modifier and Type Constant Field Value public static final int
COLORING_ALL
3
public static final int
COLORING_NONE
0
public static final int
COLORING_RGROUPS
2
public static final int
COLORING_SCAFFOLD
1
-
chemaxon.marvin.calculations.MSAPlugin Modifier and Type Constant Field Value public static final int
SOLVENT
1
public static final int
VAN_DER_WAALS
0
-
chemaxon.marvin.calculations.pKaPlugin Modifier and Type Constant Field Value public static final int
ACIDIC
-1
public static final int
BASIC
1
public static final int
DEF_MAXIONS
8
public static final double
DEF_TEMPERATURE
298.0
public static final int
DYNAMICpKaPREFIX
2
public static final int
MODEL_LARGE
1
public static final int
MODEL_SMALL
0
public static final int
STATICpKaPREFIX
1
public static final String
TYPE_DISTR
"msdistr"
-
chemaxon.marvin.calculations.StereoisomerPlugin Modifier and Type Constant Field Value public static final int
BOTH
3
public static final int
DOUBLE_BOND
2
public static final int
TETRAHEDRAL
1
-
chemaxon.marvin.common.ParameterConstants Modifier and Type Constant Field Value public static final String
ADD_REMOVE_H_ATOMS_ENABLED
"addRemoveHatomsEnabled"
public static final String
AMINOACID_BOND_COLORING_ENABLED
"aminoAcidBondColoringEnabled"
public static final String
ANY_BOND
"anybond"
public static final String
ATOM_FONT
"atomFont"
public static final String
ATOM_FONT_SIZE
"atomFontSize"
public static final String
ATOM_MAPPING_VISIBLE
"atomMappingVisible"
public static final String
ATOM_NUMBERING_TYPE
"atomNumberingType"
public static final String
ATOM_NUMBERS_VISIBLE
"atomNumbersVisible"
public static final String
ATOM_PROPERTIES_VISIBLE
"atomPropertiesVisible"
public static final String
ATOM_SET_COLOR
"atomSetColor"
public static final String
ATOM_SIZE
"atomsize"
public static final String
ATOM_SYMBOL_VISIBLE_3D
"atomSymbolVisible3D"
public static final String
ATOM_SYMBOLS_VISIBLE
"atomSymbolsVisible"
public static final String
AUTOMATIC_FOG_ENABLED
"automaticFogEnabled"
public static final String
AUTOMATIC_REACTION_ENABLED
"automaticReactionEnabled"
public static final String
BALL_RADIUS
"ballRadius"
public static final String
BOLD_BOND_WIDTH
"boldBondWidth"
public static final String
BOND_HASH_SPACING
"bondHashSpacing"
public static final String
BOND_LENGTH
"bondLength"
public static final String
BOND_LENGTH_VISIBLE
"bondLengthVisible"
public static final String
BOND_SET_COLOR
"bondSetColor"
public static final String
BOND_SPACING
"bondSpacing"
public static final String
CACHE_MOLECULES
"cacheMols"
public static final String
CHARGE_WITH_CIRCLE
"chargeWithCircle"
public static final String
CHIRALITY_SUPPORT
"chiralitySupport"
public static final String
CLEANING_2D_OPTIONS
"clean2dOpts"
public static final String
CLEANING_3D_OPTIONS
"clean3dOpts"
public static final String
CLEANING_DIMENSION
"cleanDim"
public static final String
CLEANING_OPTIONS
"cleanOpts"
public static final String
COLOR_SCHEME
"colorScheme"
public static final String
COORDINATE_BOND_STYLE
"coordinateBondStyle"
public static final String
COORDINATE_BOND_STYLE_AT_MULTICENTER
"coordinateBondStyleAtMulticenter"
public static final String
COPY_AS_FORMAT
"copyAsFormat"
public static final String
COPY_OPTIONS
"copyOpts"
public static final String
DEBUG
"debug"
public static final String
DEFAULT_SAVE_FORMAT
"defaultSaveFormat"
public static final String
DISPLAY_QUALITY
"dispQuality"
public static final String
DOWN_WEDGE
"downWedge"
public static final String
ESCAPE_CHAR
"escapeChar"
public static final String
EXPLICIT_H
"explicitH"
public static final String
EZ_VISIBLE
"EZVisible"
public static final String
FOG_FACTOR
"fogFactor"
public static final String
IMAGE_IMPORT_SERVICE_URL
"imageImportServiceURL"
public static final String
IMPLICIT_H
"implicitH"
public static final String
IMPORT_CONVERSION
"importConv"
public static final String
INVISIBLE_SETS
"invisibleSets"
public static final String
LICENSE
"license"
public static final String
LICENSE_FILE
"licenseFile"
public static final String
LIGAND_ERROR_VISIBLE
"ligandErrorVisible"
public static final String
LISTEN_PROPERTY_CHANGE
"listenpropertychange"
public static final String
LOAD_MOLECULES
"loadMols"
public static final String
LONE_PAIRS_AS_LINE
"lonePairsAsLine"
public static final String
LONE_PAIRS_VISIBLE
"lonePairsVisible"
public static final String
MARGIN_SIZE
"marginSize"
public static final String
MOLECULE
"mol"
public static final String
MOLECULE_BACKGROUND
"molbg"
public static final String
MOLECULE_FORMAT
"molFormat"
public static final String
MP_VISIBLE
"mpVisible"
public static final String
NAME_IO_WEB_SERVICE
"namingWebServiceURL"
public static final String
PEPTIDE_DISPLAY_TYPE
"peptideDisplayType"
public static final String
R_GROUPS_VISIBLE
"rgroupsVisible"
public static final String
RENDERING
"rendering"
public static final String
SAVE_PROPERTIES
"saveproperties"
public static final String
SET_COLORING_ENABLED
"setColoringEnabled"
public static final String
SHOW_SETS
"showSets"
public static final String
SKETCH_ANY_BOND
"sketchAnyBond"
public static final String
SKETCH_HELP
"sketchHelp"
public static final String
SKIN
"skin"
public static final String
SPLASH_SCREEN_IMAGE
"splashScreenImage"
public static final String
STICK_THICKNESS
"stickThickness"
public static final String
TRANSFER_BUTTON_ICON
"transferButtonIcon"
public static final String
TRANSFER_BUTTON_TEXT
"transferButtonText"
public static final String
TRANSFER_BUTTON_VISIBLE
"transferButtonVisible"
public static final String
USE_WARNINGS
"useWarnings"
public static final String
VALENCE_PROPERTY_VISIBLE
"valencePropertyVisible"
public static final String
VIEW_ANY_BOND
"viewAnyBond"
public static final String
VIEW_EXPLICIT_H
"viewExplicitH"
public static final String
VIEW_HELP
"viewHelp"
public static final String
VIEW_NAVIGATION_MODE_2D
"viewNavMode2d"
public static final String
VIEW_NAVIGATION_MODE_3D
"viewNavMode3d"
public static final String
WIRE_THICKNESS
"wireThickness"
public static final String
ZERO_BASED_ATOM_INDEXING
"zeroBasedAtomIndexing"
-
chemaxon.marvin.common.UserSettings Modifier and Type Constant Field Value public static final String
MARVIN_CONFIG_DEFAULT_PATH
"marvin.properties"
public static final int
MAX_RECENT_FILE_LIST_SIZE
50
public static final int
MIN_RECENT_FILE_LIST_SIZE
1
public static final String
PROPERTY_TYPE_ALL
"all"
public static final String
PROPERTY_TYPE_DEFAULT
"default"
public static final String
PROPERTY_TYPE_PERSISTENT
"persistent"
public static final String
PROPERTY_TYPE_TRANSIENT
"transient"
-
chemaxon.marvin.io.MRecord Modifier and Type Constant Field Value public static final int
F_MOL_MISSING
1
-
chemaxon.marvin.io.image.ImageExportParamConstants Modifier and Type Constant Field Value public static final String
ABSOLUTE_LABEL_VISIBLE
"absLabelVisible"
public static final String
ATOM_FONT
"atomFont"
public static final String
ATOM_MAPPING_VISIBLE
"amap"
public static final String
ATOM_NUMBERING_TYPE
"atomNumberingType"
public static final String
ATOM_NUMBERS_VISIBLE
"anum"
public static final String
ATOM_PROPERTIES_VISIBLE
"aprop"
public static final String
ATOMSIZE
"atsiz"
public static final String
BALLRADIUS
"ballRadius"
public static final String
BOLD_BOND_WIDTH
"boldbondw"
public static final String
BOND_HASH_SPACING
"bondHashSpacing"
public static final String
BOND_LENGTH
"bondl"
public static final String
BOND_LENGTH_VISIBLE
"bondLengthVisible"
public static final String
BONDWIDTH
"bondw"
public static final String
CHARGE_FONT
"chargeFont"
public static final String
CHARGE_FONT_SIZE
"chargeFontSize"
public static final String
CHARGE_WITH_CIRCLE
"chargeWithCircle"
public static final String
DISABLE_AMINOACID_BOND_COLORING
"disableAminoAcidBondColoring"
public static final String
EZ_LABEL_VISIBLE
"ez"
public static final String
FOG_FACTOR
"fogFactor"
public static final String
GRAPH_INVARIANTS_VISIBLE
"grinvVisible"
public static final String
HEIGHT
"h"
public static final String
HIDE_ATOM_SYMBOL_IN_3D
"noatsym"
public static final String
IGNORE_SGROUP_DATA_FORMAT
"plaindata"
public static final String
INVISIBLE_R_GROUPS
"noRGroups"
public static final String
INVISIBLE_R_LOGIC
"noRLogic"
public static final String
LIGAND_ERROR_VISIBLE
"liganderr"
public static final String
LONE_PAIRS_AS_LINE
"lonePairsAsLine"
public static final String
LONE_PAIRS_VISIBLE
"lp"
public static final String
MARGINSIZE
"marginSize"
public static final String
MAXSCALE
"maxscale"
public static final String
MP_LABEL_VISIBLE
"mp"
public static final String
NOANTIALIAS
"noantialias"
public static final String
ONE_LETTER_PEPTIDE_DISPLAY
"oneLetterPeptideDisplay"
public static final String
SCALE
"scale"
public static final String
SETCOLORS
"setcolors"
public static final String
SHOW_EXPLICIT_LONE_PAIRS
"lpexpl"
public static final String
STICKTHICKNESS
"stickThickness"
public static final String
TRANSPARENT_BACKGROUND
"transbg"
public static final String
VALANCE_ERROR_VISIBLE
"valenceErrorVisible"
public static final String
VALENCE_PROPERTY_VISIBLE
"valprop"
public static final String
WIDTH
"w"
public static final String
WIRETHICKNESS
"wireThickness"
-
chemaxon.marvin.modules.datatransfer.MTransferable Modifier and Type Constant Field Value public static final int
CLIPBOARD_OPERATION_GET
2
public static final int
CLIPBOARD_OPERATION_PUT
1
public static final int
CLIPBOARD_OPERATION_UNDEFINED
0
public static final String
CLIPBOARD_ORIGIN_IS_FILE
"ClipboardOriginIsFile"
-
chemaxon.marvin.paint.DispOptConsts Modifier and Type Constant Field Value public static final int
ABS_FLAG
33554432
public static final int
APPLY_DEPTH_CUE
32
public static final int
ATMAP_FLAG
4096
public static final int
ATNUM_FLAG
2048
public static final int
ATPROP_FLAG
8
public static final int
ATSYM_FLAG
1024
public static final int
AUTOMATIC_FOG
32
public static final int
BONDLEN_FLAG
8192
public static final int
CARBON_VIS_INCHAIN
268435456
public static final String
CARBON_VIS_INCHAIN_S
"inChain"
public static final int
CARBON_VIS_MASK
805306368
public static final int
CARBON_VIS_OFF
0
public static final String
CARBON_VIS_OFF_S
"off"
public static final int
CARBON_VIS_OFFSET
28
public static final int
CARBON_VIS_ON
536870912
public static final String
CARBON_VIS_ON_S
"on"
public static final int
CHARGE_WITH_CIRCLE_FLAG
4096
public static final int
CHARGE_WITH_CIRCLE_OFFSET
12
public static final int
COLORS_MASK
192
public static final int
COLORS_OFFSET
6
public static final String
COORDINATE_BOND_ARROW_S
"arrow"
public static final int
COORDINATE_BOND_AT_MULTICENTER_FLAG
256
public static final int
COORDINATE_BOND_AT_MULTICENTER_OFFSET
8
public static final String
COORDINATE_BOND_HASHED_S
"hashed"
public static final String
COORDINATE_BOND_SOLID_S
"solid"
public static final int
COORDINATE_BOND_STYLE_FLAG
512
public static final int
COORDINATE_BOND_STYLE_OFFSET
9
public static final int
CPK_SCHEME
64
public static final String
CPK_SCHEME_S
"cpk"
public static final int
DAYLIGHT_DOWNWEDGE_FLAG
1048576
public static final String
DAYLIGHT_DOWNWEDGE_S
"daylight"
public static final int
DIM_FLAG
1073741824
public static final int
DOWNWEDGE_OFFSET
20
public static final int
EZ_FLAG
65536
public static final int
GRINV_FLAG
512
public static final int
GROUP_SCHEME
192
public static final String
GROUP_SCHEME_S
"group"
public static final int
IMPLICITH_ALL
3
public static final String
IMPLICITH_ALL_S
"all"
public static final int
IMPLICITH_HETERO
1
public static final String
IMPLICITH_HETERO_S
"hetero"
public static final int
IMPLICITH_HETEROTERM
2
public static final String
IMPLICITH_HETEROTERM_S
"heteroterm"
public static final int
IMPLICITH_MASK
3
public static final int
IMPLICITH_OFF
0
public static final String
IMPLICITH_OFF_S
"off"
public static final int
LIGAND_ERROR_VISIBILITY_FLAG
128
public static final int
LIGAND_ORDER_MASK
3
public static final int
LIGAND_ORDER_OFF
1
public static final String
LIGAND_ORDER_OFF_S
"off"
public static final int
LIGAND_ORDER_ON
0
public static final String
LIGAND_ORDER_ON_S
"on"
public static final int
LIGAND_ORDER_ONLY_WITH_DEFINITION
2
public static final String
LIGAND_ORDER_ONLY_WITH_DEFINITION_S
"showOnlyWithDefinition"
public static final int
LONE_PAIRS_AS_LINE_FLAG
2048
public static final int
LONE_PAIRS_AS_LINE_OFFSET
11
public static final int
LP_AUTO_FLAG
134217728
public static final int
LP_FLAG
16777216
public static final String
MDL_DOWNWEDGE_S
"mdl"
public static final int
MM_MASK
56
public static final int
MM_OFFSET
3
public static final int
MM_ROT3D
24
public static final int
MM_ROTZ
16
public static final int
MM_ZOOM
8
public static final int
MM_ZOOMROT
32
public static final int
MONO_SCHEME
0
public static final String
MONO_SCHEME_S
"mono"
public static final String
ONE_LETTER_PEPTIDE_DISPLAY_S
"1-letter"
public static final int
PEPTIDE_DISPLAY_SETTINGS_FLAG
1024
public static final int
PEPTIDE_DISPLAY_SETTINGS_OFFSET
10
public static final int
QUALITY_MASK
8388608
public static final int
QUALITY_OFFSET
23
public static final int
RGROUPS_FLAG
67108864
public static final int
RLOGIC_FLAG
16
public static final int
RS_ALL
32768
public static final int
RS_ALL_POSSIBLE
49152
public static final String
RS_ALL_POSSIBLE_S
"allPossible"
public static final String
RS_ALL_S
"all"
public static final int
RS_MASK
49152
public static final int
RS_OFF
0
public static final String
RS_OFF_S
"off"
public static final int
RS_OFFSET
14
public static final int
RS_SELECTED
16384
public static final String
RS_SELECTED_S
"selected"
public static final int
SET_SCHEME_FLAG
256
public static final int
SHAPELY_SCHEME
128
public static final String
SHAPELY_SCHEME_S
"shapely"
public static final String
THREE_LETTER_PEPTIDE_DISPLAY_S
"3-letter"
public static final int
VALENCE_PROP_VISIBILITY_FLAG
64
-
chemaxon.marvin.plugin.CalculatorPlugin Modifier and Type Constant Field Value public static final int
ATOM
1
public static final int
BLUE
255
protected static final int
CALCRGB_OFF
32
protected static final String
COVALENT_HYDRATION_ERROR_REMARK
"Covalent hydration occurred."
protected static final String
CRITICAL_ERROR_MSG
"Inconsistent molecular structure."
public static final double
EPSILON
0.1
protected static final String
INCORRECT_AROMATIC_NITROGEN_REMARK
"Aromatic nitrogen is not specified correctly."
protected static final String
INSTABLE_TAUTOMERIC_FORM_REMARK
"Instable tautomeric form."
protected static final String
KEEP_HYDROGENS
"keephydrogens"
public static final int
MOLECULE
2
public static final int
MOLECULES
4
public static final String
PLUGIN_CLASS_KEY
"Plugin-Class"
public static final String
PLUGIN_DIR
"/xjars"
public static final int
RED
16711680
protected static final String
TRUE
"true"
-
chemaxon.marvin.plugin.CalculatorPluginDisplay<P extends CalculatorPlugin> Modifier and Type Constant Field Value protected static final int
CELLSIZE
380
protected static final int
HTML
3
protected static final int
LABEL
1
protected static final int
MAX_LINE_LENGTH
50
protected static final int
NONE
0
protected static final int
TEXT
2
protected static final String
WORD_SEPARATORS
"- "
-
chemaxon.marvin.plugin.PluginFactory Modifier and Type Constant Field Value public static final String
DEFAULT_CONFIG_FILE
"plugins.properties"
public static final String
NOPARAMS
"NOPARAMS"
public static final String
PRELOAD
"PRELOAD"
public static final String
SEPARATOR
"SEPARATOR"
-
chemaxon.marvin.services.ServiceDescriptorEditor<T extends chemaxon.marvin.services.ServiceDescriptor> Modifier and Type Constant Field Value public static final String
PROPERTY_KEY_PREFERRED_DESCRIPTION
"PreferredDescription"
public static final String
PROPERTY_KEY_PREFERRED_NAME
"PreferredName"
public static final String
PROPERTY_KEY_USERSETTINGS
"UserSettings"
public static final String
PROPERTY_KEY_VALID
"EditorValid"
-
chemaxon.marvin.services.ServiceDescriptorTools Modifier and Type Constant Field Value public static final String
DEFAULT_SERVICE_CONFIGURATION_PATH
"/chemaxon/marvin/services/config/resources/default.xml"
public static final String
DEFAULT_SERVICE_DESCRIPTOR_EDITOR_PROVIDER_CLASSNAME
"chemaxon.marvin.services.ui.XMLBasedServiceDescriptorEditorProvider"
public static final String
DEFAULT_SERVICE_DESCRIPTOR_READER_CLASSNAME
"chemaxon.marvin.services.config.XMLBasedServiceDescriptorReader"
public static final String
DEFAULT_SERVICE_DESCRIPTOR_WRITER_CLASSNAME
"chemaxon.marvin.services.config.XMLBasedServiceDescriptorWriter"
public static final String
DEFAULT_SERVICE_DIALOG_PROVIDER_CLASSNAME
"chemaxon.marvin.sketch.swing.modules.services.SketchBasedServiceDialogProvider"
public static final String
DEFAULT_USER_SERVICE_CONFIGURATION_FILENAME
"servicesconfig.xml"
public static final String
SERVICE_CONFIGURATION_PATH_PROPERTY_KEY
"chemaxon.marvin.services.ServiceConfigurationPath"
public static final String
SERVICE_DIALOG_PROVIDER_CLASS_NAME_PROPERTY_KEY
"chemaxon.marvin.services.ServiceDialogProvider"
-
chemaxon.marvin.services.json.JsonServiceDescriptor Modifier and Type Constant Field Value public static final String
DESCRIPTOR_URI
"descriptorUri"
-
chemaxon.marvin.services.localservice.LocalServiceDescriptor Modifier and Type Constant Field Value public static final String
CLASS
"class"
-
chemaxon.marvin.services.soap.SoapServiceDescriptor Modifier and Type Constant Field Value public static final String
NAMESPACE
"namespace"
public static final String
PORT
"port"
public static final String
SERVICE
"webservice"
public static final String
WSDL
"wsdl"
-
chemaxon.marvin.sketch.SketchParameterConstants Modifier and Type Constant Field Value public static final String
ABBREVIATED_GROUPS
"abbrevgroups"
public static final String
ABBREVIATED_GROUPS_ALLOWED
"abbrevgroupsAllowed"
public static final String
ABSOLUTE_LABEL_VISIBLE
"absLabelVisible"
public static final String
ATOM_STRINGS
"atomStrings"
public static final String
AUTO_CHECK_STRUCTURE
"autoCheckStructure"
public static final String
AUTO_SCALE
"autoscale"
public static final String
BACKGROUNDLOAD_ENABLED
"bgloadEnabled"
public static final String
BACKGROUNDLOAD_PRIORITY
"bgloadPriority"
public static final String
BOND_DRAGGED_ALONG
"bondDraggedAlong"
public static final String
BUTTON_MENUBAR
"buttonmenubar"
public static final String
CUSTOMIZATION_ENABLED
"customizationEnabled"
public static final String
DATA_COLLECTION_CONSENT
"dataCollectionConsent"
public static final String
DATA_COLLECTION_SERVER
"dataCollectionServer"
public static final String
DEFAULT_TOOL
"defaultTool"
public static final String
DETACH
"detach"
public static final String
DISABLE_SPECIAL_NODES
"disableSpecialNodes"
public static final String
ELEMENTS
"elements"
public static final String
ENABLED_2D_VIEWER
"2dviewerEnabled"
public static final String
ENABLED_3D_VIEWER
"3dviewerEnabled"
public static final String
EXTRA_BONDS
"extraBonds"
public static final String
EXTRA_TEMPLATES
"xtmpls"
public static final String
GRAPH_INVARIANTS_VISIBLE
"grinvVisible"
public static final String
GRID_VISIBLE
"sketchGridVisible"
public static final String
GROUPTYPE_ALTERNATING_COPOLYMER_GROUP
"alternatingCopolymerGroup"
public static final String
GROUPTYPE_ANYPOLYMER_GROUP
"anypolymerGroup"
public static final String
GROUPTYPE_BLOCK_COPOLYMER_GROUP
"blockCopolymerGroup"
public static final String
GROUPTYPE_COMPONENT_GROUP
"componentGroup"
public static final String
GROUPTYPE_COPOLYMER_GROUP
"copolymerGroup"
public static final String
GROUPTYPE_CROSSLINK_GROUP
"crosslinkGroup"
public static final String
GROUPTYPE_GENERIC_GROUP
"genericGroup"
public static final String
GROUPTYPE_GRAFT_GROUP
"graftGroup"
public static final String
GROUPTYPE_MER_GROUP
"merGroup"
public static final String
GROUPTYPE_MODIFICATION_GROUP
"modificationGroup"
public static final String
GROUPTYPE_MONOMER_GROUP
"monomerGroup"
public static final String
GROUPTYPE_MULTIPLE_GROUP
"multipleGroup"
public static final String
GROUPTYPE_ORDERED_MIXTURE_GROUP
"orderedMixtureGroup"
public static final String
GROUPTYPE_RANDOM_COPOLYMER_GROUP
"randomCopolymerGroup"
public static final String
GROUPTYPE_RANGE_GROUP
"rangeGroup"
public static final String
GROUPTYPE_SRU_GROUP
"sruGroup"
public static final String
GROUPTYPE_SUPERATOM_GROUP
"superatomGroup"
public static final String
GROUPTYPE_UNORDERED_MIXTURE_GROUP
"unorderedMixtureGroup"
public static final String
IMAGE_SAVE_FORMAT
"imageSaveFormat"
public static final String
IMAGE_SAVE_URL
"imageSaveURL"
public static final String
IMAGE_SHOW_URL
"imageShowURL"
public static final String
LAST_LICENSE
"lastLicense"
public static final String
LONE_PAIRS_AUTO_CALCULATION
"lonePairsAutoCalc"
public static final String
MAX_SCALE
"maxscale"
public static final String
MENU_CUSTOMIZATION_FILE
"menuconfig"
public static final String
MENUBAR
"menubar"
public static final String
MERGE_DISTANCE
"mergedst"
public static final String
MOL_LOADER_FINISHED_EVENT
"molLoaderFinishedEvent"
public static final String
MORE_ENABLED
"moreEnabled"
public static final String
MP_VISIBLE
"mpVisible"
public static final String
PRELOAD
"preload"
public static final String
QUERY_ATOMS
"queryAtoms"
public static final String
REACTION_ERROR_VISIBLE
"reactionErrorVisible"
public static final String
REACTION_SUPPORT
"reactionSupport"
public static final String
RLOGIC_VISIBLE
"rLogicVisible"
public static final String
SCALE
"scale"
public static final String
SHORTCUTS
"shortcuts"
public static final String
SIMPLE_VIEW
"simpView"
public static final String
SKETCH_ARROW_HEAD_LENGTH
"sketchArrowHeadLength"
public static final String
SKETCH_ARROW_HEAD_WIDTH
"sketchArrowHeadWidth"
public static final String
SKETCH_ARROW_TAIL_LENGTH
"sketchArrowTailLength"
public static final String
SKETCH_ARROW_TAIL_WIDTH
"sketchArrowTailWidth"
public static final String
SKETCH_CARBON_VISIBILITY
"sketchCarbonVisibility"
public static final String
SKETCH_LIGAND_ORDER_VISIBILITY
"sketchLigandOrderVisibility"
public static final String
SKETCH_STARTUP_SHOWN
"sketchStartupShown"
public static final String
SKETCHPANEL_LAST_HEIGHT
"sketchLastHeight"
public static final String
SKETCHPANEL_LAST_WIDTH
"sketchLastWidth"
public static final String
STATUS_BAR
"statusBar"
public static final String
STICK_DISTANCE
"stickdst"
public static final String
TEMPLATE_TOOLBAR_CUSTOMIZABLE
"templateToolbarCustomizable"
public static final String
TEMPLATES
"tmpls"
public static final String
TOOLBAR_FLOATABLE
"toolbarFloatable"
public static final String
TOOLBAR_TEMPLATES
"ttmpls"
public static final String
TRANSFORMATION_ENABLED
"transformationEnabled"
public static final String
UI_DISABLED_GROUP_TYPES
"disabledGroupTypesOnUI"
public static final String
UNDETACH_BY_X
"undetachByX"
public static final String
UNDO
"undo"
public static final String
USED_JARS
"usedJars"
public static final String
UUID
"uuid"
public static final String
VALENCE_CHECK_ENABLED
"valenceCheckEnabled"
public static final String
VALENCE_ERROR_VISIBLE
"valenceErrorVisible"
public static final String
VIEW_ONLY
"viewonly"
public static final String
ZOOM_TO_SCAFFOLD_ON_LOAD
"zoomToScaffoldOnLoad"
-
chemaxon.marvin.space.GraphicCell Modifier and Type Constant Field Value protected static final int
DEFAULT_NEAR_EDGE
30
protected static final int
MAX_NUMBER_OF_COMPONENTS_PER_CELL
256
protected static final int
MODE_NORMAL
1
protected static final int
MODE_PICK
2
-
chemaxon.marvin.space.GraphicComponent Modifier and Type Constant Field Value protected static final int
COMPONENT_TYPE_ENTIRE
1
public static final int
RENDERING_QUALITY_HIGH
3
public static final int
RENDERING_QUALITY_LOW
1
public static final int
RENDERING_QUALITY_MEDIUM
2
-
chemaxon.marvin.space.GraphicScene Modifier and Type Constant Field Value public static final int
CELL_RANGE
2
public static final int
COMPONENT_RANGE
3
public static final int
MODE_MOVING
2
public static final int
MODE_STANDING
1
public static final String
MSPACE_CONFIG_DEFAULT_PATH
"mspace.properties"
public static final int
SCENE_RANGE
1
public static final int
VERBOSE_LEVEL_BASIC
1
public static final int
VERBOSE_LEVEL_DEVEL
2
public static final int
VERBOSE_LEVEL_NONE
0
-
chemaxon.marvin.space.MacroMoleculeComponent Modifier and Type Constant Field Value public static final int
B_FACTOR_MODE
12
protected static final int
COMPONENT_TYPE_ATOM
2
protected static final int
COMPONENT_TYPE_BOND
3
protected static final int
COMPONENT_TYPE_MOLECULE
4
protected static final int
COMPONENT_TYPE_RESIDUE
5
public static final int
RAINBOW_MODE
11
-
chemaxon.marvin.space.MolecularSurfaceComponent Modifier and Type Constant Field Value protected static final boolean
AUTO_RESOLUTION_ENABLED
true
public static final float
DEFAULT_ISOVALUE
0.017999999225139618f
public static final float
DEFAULT_PROBE_RADIUS
1.399999976158142f
public static final float
DEFAULT_RESOLUTION
0.550000011920929f
public static final int
SURFACE_COLOR_GRID_MAPPING
7
public static final int
SURFACE_COLOR_PROPERTY_MAPPING
8
public static final int
SURFACE_COLOR_TYPE_ATOMTYPE
2
public static final int
SURFACE_COLOR_TYPE_B_FACTOR
9
public static final int
SURFACE_COLOR_TYPE_CHAIN
4
public static final int
SURFACE_COLOR_TYPE_CONSTANT
1
public static final int
SURFACE_COLOR_TYPE_EP
5
public static final int
SURFACE_COLOR_TYPE_RAINBOW
10
public static final int
SURFACE_COLOR_TYPE_RESIDUE
3
public static final int
SURFACE_COLOR_TYPE_SS
6
protected static final boolean
SURFACE_SIMPLIFICATION_ENABLED
false
protected static final int
SURFACE_SMOOTHNESS
2
public static final int
SURFACE_TYPE_BLOBBY
4
public static final int
SURFACE_TYPE_CONNOLLY
2
public static final int
SURFACE_TYPE_GAUSSIAN
5
public static final int
SURFACE_TYPE_SAS
3
public static final int
SURFACE_TYPE_VDW
1
-
chemaxon.marvin.space.MoleculeComponent Modifier and Type Constant Field Value protected static final int
BOND_DRAW_TYPE_BOND
1
protected static final int
BOND_DRAW_TYPE_STICK
2
protected static final int
BOND_DRAW_TYPE_WIRE
3
protected static final boolean
BOND_FACING
true
protected static final int
COMPONENT_TYPE_ATOM
2
protected static final int
COMPONENT_TYPE_BOND
3
protected static final int
COMPONENT_TYPE_MOLECULE
4
protected static final double
DEFAULT_BALL_RADIUS
0.4
protected static final int
DEFAULT_BOND_DISTANCE
100
protected static final double
DEFAULT_BOND_RADIUS
0.1
protected static final int
DEFAULT_BOND_WIDTH
50
protected static final int
DEFAULT_H_BALL_PRECISION
4
protected static final int
DEFAULT_H_BOND_SLICE_PRECISION
10
protected static final int
DEFAULT_H_JOINT_PRECISION
4
protected static final int
DEFAULT_H_SPACEFILL_PRECISION
5
protected static final int
DEFAULT_H_STICK_SLICE_PRECISION
22
protected static final int
DEFAULT_L_BALL_PRECISION
2
protected static final int
DEFAULT_L_BOND_SLICE_PRECISION
6
protected static final int
DEFAULT_L_JOINT_PRECISION
2
protected static final int
DEFAULT_L_SPACEFILL_PRECISION
3
protected static final int
DEFAULT_L_STICK_SLICE_PRECISION
14
protected static final double
DEFAULT_LINE_WIDTH
2.0
protected static final int
DEFAULT_M_BALL_PRECISION
3
protected static final int
DEFAULT_M_BOND_SLICE_PRECISION
8
protected static final int
DEFAULT_M_JOINT_PRECISION
3
protected static final int
DEFAULT_M_SPACEFILL_PRECISION
4
protected static final int
DEFAULT_M_STICK_SLICE_PRECISION
18
protected static final double
DEFAULT_STICK_RADIUS
0.3
protected static final boolean
DISPLAY_BOND_ORDER
true
protected static final int
DRAW_TYPE_BALL
3
protected static final int
DRAW_TYPE_BALL_AND_STICK
6
protected static final int
DRAW_TYPE_BALL_AND_WIRE
5
protected static final int
DRAW_TYPE_SPACEFILL
7
protected static final int
DRAW_TYPE_STICK
4
protected static final int
DRAW_TYPE_WIRE
2
public static final int
LONE_PAIR_TYPE
130
protected static final boolean
SCALED_BALLS
false
protected static final boolean
SMOOTH_STICKS
false
-
chemaxon.marvin.space.PharmacophorePoint Modifier and Type Constant Field Value public static final int
ACCEPTOR_TYPE
1
public static final int
ANIONIC_TYPE
4
public static final int
AROMATIC_TYPE
32
public static final int
CATIONIC_TYPE
8
public static final float
DEFAULT_RADIUS
1.0f
public static final int
DONOR_TYPE
2
public static final int
EXCLUDED_TYPE
4096
public static final int
HYDROPHOBIC_TYPE
16
public static final int
UNKONWN_TYPE
0
-
chemaxon.marvin.space.SurfaceColoring Modifier and Type Constant Field Value public static final int
ATOM_PROPERTY_MAPPING
1
public static final int
BUILT_IN_CHAIN_MAPPING
4
public static final int
BUILT_IN_CPK_MAPPING
2
public static final int
BUILT_IN_RAINBOW_MAPPING
6
public static final int
BUILT_IN_RESIDUE_MAPPING
3
public static final int
BUILT_IN_SECONDARY_STRUCTURE_MAPPING
5
public static final int
COLOR_MAPPER_BLUE_TO_GREEN
4
public static final int
COLOR_MAPPER_BLUE_TO_RED
1
public static final int
COLOR_MAPPER_FIRE
6
public static final int
COLOR_MAPPER_GREEN_TO_BLUE
5
public static final int
COLOR_MAPPER_RAINBOW
2
public static final int
COLOR_MAPPER_RED_TO_BLUE
0
public static final int
COLOR_MAPPER_REVERSE_RAINBOW
3
public static final int
DECREASE_LINEAR
2
public static final int
DECREASE_RECIPROCAL_SQUARE
8
public static final int
DECREASE_SQUARE
4
public static final int
DISTANCE_CONSTANT
3
public static final int
DISTANCE_FROM_VDW
1
public static final int
DISTANCE_FROM_VDW_EXTENDED
2
public static final int
DISTANCE_WEIGHTED
3
public static final int
GRID_MAPPING
0
public static final int
MEAN_VALUE
2
public static final int
NEAREST_VALUE
0
public static final int
NO_DECREASE
1
public static final int
RADIUS_CONSTANT
3
public static final int
RADIUS_VDW
1
public static final int
RADIUS_VDW_EXTENDED
2
public static final int
SUM_OF_VALUES
1
-
chemaxon.marvin.space.SurfaceComponent Modifier and Type Constant Field Value public static final int
DOTTED_TYPE
1
public static final int
FILLED_TYPE
3
public static final int
MESH_TYPE
2
public static final int
TRANSPARENT_TYPE
4
-
chemaxon.marvin.space.monitor.Control Modifier and Type Constant Field Value protected static final int
DEFAULT_SIZE
15
-
chemaxon.marvin.space.monitor.Label Modifier and Type Constant Field Value public static final int
BACKGROUND_MODE_NONE
0
public static final int
BACKGROUND_MODE_OWN_COLOR
1
public static final int
BORDER_MODE_BRIGHTER_FOREGROUND
3
public static final int
BORDER_MODE_FOREGROUND_COLOR
2
public static final int
BORDER_MODE_NONE
0
public static final int
BORDER_MODE_OWN_COLOR
1
protected static final int
ITEM_COUNT
1
public static final int
LARGE_FONT_SIZE
8
public static final int
MEDIUM_FONT_SIZE
7
public static final int
SMALL_FONT_SIZE
6
-
chemaxon.marvin.util.CopyOptConstants Modifier and Type Constant Field Value public static final String
COPY_AS_IMAGE_BITMAP
"bitmap"
public static final String
COPY_AS_IMAGE_EMF
"emf"
public static final String
COPY_AS_OLE
"ole"
public static final String
COPY_AS_TEXT
"text"
public static final String
FMT_EMF
"emf"
public static final String
FMT_IMAGE
"image"
public static final String
FMT_MOL
"mol"
public static final String
FMT_MRV
"mrv"
public static final String
FMT_OLE
"ole"
public static final String
FMT_PLAINTEXT
"PlainText"
public static final String
FMT_RXN
"rxn"
public static final String
FMT_SMILES
"smiles"
public static final String
FMT_STRING
"String"
public static final String
FMT_STRUCTURE
"structure"
-
chemaxon.marvin.util.OptionDescriptor Modifier and Type Constant Field Value public static final int
BOOL
0
public static final int
NONNEGATIVE_REAL
1
-
chemaxon.marvin.util.codeassist.CodeAssistFactory Modifier and Type Constant Field Value public static final String
PROPERTY_KEY_FACTORY_INSTANCE
"AlchemistCodeAssistFactory_Instance"
-
chemaxon.marvin.view.ViewParameterConstants Modifier and Type Constant Field Value public static final String
ANIMATE
"animate"
public static final String
ANIMATION_DELAY
"animDelay"
public static final String
ANIMATION_FPS
"animFPS"
public static final String
ANIMATION_SYNCHRONIZATION
"animSync"
public static final String
ATOM_SET
"atomSet"
public static final String
AUTO_TAB_SCALE
"autoTabScale"
public static final String
BACKGROUND
"background"
public static final String
BOND_SET
"bondSet"
public static final String
BORDER
"border"
public static final String
CELL
"cell"
public static final String
COLS
"cols"
public static final String
CONFIRM_TRANSFER
"confirmTransfer"
public static final String
DETACHABLE
"detachable"
public static final String
DRAGGABLE
"draggable"
public static final String
EDITABLE
"editable"
public static final String
GRAPH_INVARIANTS
"grinv"
public static final String
IMPORT_ENABLED
"importEnabled"
public static final String
LAYOUT
"layout"
public static final String
LAYOUT_HEADER
"layoutH"
public static final String
LISTEN_MOUSE_EVENT
"listenmouseevent"
public static final String
MOLECULE_CHANGED
"molChanged"
public static final String
NAVIGATION_MODE
"navmode"
public static final String
PARAMETERS
"param"
public static final String
PARAMETERS_HEADER
"paramH"
public static final String
ROWS
"rows"
public static final String
SCRIPT
"script"
public static final String
SELECTABLE
"selectable"
public static final String
SELECTED_INDEX
"selectedIndex"
public static final String
SELECTION
"selection"
public static final String
SPIN
"spin"
public static final String
TAB_SCALE
"tabScale"
public static final String
VALENCE_ERROR_VISIBLE_IN_VIEW
"valenceErrorVisibleInView"
public static final String
VIEW_CARBON_VISIBILITY
"viewCarbonVisibility"
public static final String
VIEW_LIGAND_ORDER_VISIBILITY
"viewLigandOrderVisibility"
public static final String
VIEW_PANEL_LAST_HEIGHT
"viewLastHeight"
public static final String
VIEW_PANEL_LAST_WIDTH
"viewLastWidth"
public static final String
VISIBLE_COLS
"visibleCols"
public static final String
VISIBLE_ROWS
"visibleRows"
public static final String
WINDOW_SCALE
"winScale"
-
chemaxon.marvin.view.swing.TableOptions Modifier and Type Constant Field Value public static final int
MMF_FIELD
1
public static final int
MMF_NOT_FIELD
2
public static final int
MMF_UNSET
0
public static final int
VH_AUTO
0
public static final int
VH_GRIDBAG
1
public static final int
VH_SPREADSHEET
2
chemaxon.naming.*
-
chemaxon.naming.document.DocumentToStructure Modifier and Type Constant Field Value public static final String
BYTE
"byte"
public static final String
CHARACTER
"character"
public static final String
CONFIDENCE
"confidence"
public static final String
CONTEXT
"context"
public static final String
CONTEXT_INDEX
"context index"
public static final String
DOC_AUTHOR
"author"
public static final String
DOC_CREATION_DATE
"creation date"
public static final String
DOC_LAST_AUTHOR
"last author"
public static final String
DOC_PATENT_ASSIGNEES
"assignees"
public static final String
DOC_PATENT_ID
"patent ID"
public static final String
DOC_PATENT_INVENTORS
"inventors"
public static final String
DOC_PATENT_IPC
"IPC"
public static final String
DOC_PATENT_IPCR
"IPCR"
public static final String
DOC_TITLE
"title"
public static final String
DOCUMENT
"document"
public static final String
END_CHARACTER
"end"
public static final String
IDENTIFIER
"identifier"
public static final String
PAGE
"page"
public static final String
SECTION
"section"
public static final String
SOURCE_TEXT
"text"
public static final String
TYPE
"type"
public static final String
TYPE_CAS
"CAS#"
public static final String
TYPE_CDX
"cdx"
public static final String
TYPE_COMMON
"common"
public static final String
TYPE_EC
"EC"
public static final String
TYPE_GENERIC
"generic"
public static final String
TYPE_INCHI
"InChI"
public static final String
TYPE_ION
"ion"
public static final String
TYPE_MRV
"mrv"
public static final String
TYPE_OSR
"OSR"
public static final String
TYPE_PEPTIDE
"peptide"
public static final String
TYPE_SMILES
"smiles"
public static final String
TYPE_SYMYX
"symyx"
public static final String
TYPE_SYSTEMATIC
"systematic"
-
chemaxon.naming.document.annotate.DocumentAnnotator Modifier and Type Constant Field Value public static final String
MOL_UID_PROPERTY
"UID"
chemaxon.pharmacophore.*
-
chemaxon.pharmacophore.PMapper Modifier and Type Constant Field Value public static final String
DEFAULT_TAG_NAME
"PMAP"
chemaxon.reaction.*
-
chemaxon.reaction.ConcurrentReactorProcessor Modifier and Type Constant Field Value public static final int
MODE_COMBINATORIAL
1
public static final int
MODE_SEQUENTIAL
0
-
chemaxon.reaction.Reactor Modifier and Type Constant Field Value public static final double
DEF_TOLERANCE
1.0E-4
public static final int
FUSED_REACTION_OUTPUT
4
public static final int
IGNORE_REACTIVITY
1
public static final int
IGNORE_SELECTIVITY
2
public static final int
IGNORE_TOLERANCE
4
public static final int
MAPPING_STYLE_CHANGING
1
public static final int
MAPPING_STYLE_COMPLETE
2
public static final int
MAPPING_STYLE_MATCHING
3
public static final int
MAPPING_STYLE_NONE
0
public static final String
MINOR_PRODUCT_TAG
"CXN_REACTOR_MINOR_PRODUCT"
public static final int
NO_DUPLICATE_FILTERING
0
public static final int
ORDER_INSENSITIVE_DUPLICATE_FILTERING
2
public static final int
ORDER_SENSITIVE_DUPLICATE_FILTERING
1
public static final int
PRODUCT_OUTPUT
0
public static final int
REACTION_OUTPUT
1
chemaxon.sss.*
-
chemaxon.sss.SearchConstants Modifier and Type Constant Field Value public static final int
ABS_STEREO_ALWAYS_ON
2
public static final int
ABS_STEREO_CHIRAL_FLAG
1
public static final int
ABS_STEREO_TABLE_OPTION
0
public static final int
ATTACHED_DATA_MATCH_EXACT
2
public static final int
ATTACHED_DATA_MATCH_GENERAL
1
public static final int
ATTACHED_DATA_MATCH_IGNORE
0
public static final int
ATTACHMENT_ATOM
4
public static final int
ATTACHMENT_LABEL
3
public static final int
ATTACHMENT_MAP
2
public static final int
ATTACHMENT_NONE
0
public static final int
ATTACHMENT_POINT
1
public static final int
ATTACHMENT_RLABEL
5
public static final int
CHARGE_MATCHING_DEFAULT
0
public static final int
CHARGE_MATCHING_EXACT
1
public static final int
CHARGE_MATCHING_IGNORE
2
public static final float
DEFAULT_DISSIMILARITY_THRESHOLD
0.30000001192092896f
public static final int
DEFAULT_SEARCHTYPE
2
public static final String
DISSIMILARITY_PROPERTY_NAME
"dissimilarity"
public static final int
DUPLICATE
5
public static final int
FULL
4
public static final int
FULL_FRAGMENT
7
public static final int
HCOUNT_MATCHING_AUTO
0
public static final int
HCOUNT_MATCHING_EQUAL
1
public static final int
HCOUNT_MATCHING_GREATER_OR_EQUAL
2
public static final int
HIT_EXCLUDEDQ
-2147483641
public static final int
HIT_LP
-2147483644
public static final int
HIT_MULTICENTER
-2147483646
public static final int
HIT_NON_R
-2147483642
public static final int
HIT_ORDERING_NONE
0
public static final int
HIT_ORDERING_UNDEF_R_MATCHING_GROUP_FIRST
1
public static final int
HIT_R
-2147483647
public static final int
HIT_R_EMPTY_MATCH
-2147483643
public static final int
HIT_UNMAPABLE
-2147483645
public static final int
IMPLICIT_H_MATCHING_DEFAULT
0
public static final int
IMPLICIT_H_MATCHING_DISABLED
2
public static final int
IMPLICIT_H_MATCHING_ENABLED
1
public static final int
IMPLICIT_H_MATCHING_IGNORE
3
public static final int
ISOTOPE_MATCHING_DEFAULT
0
public static final int
ISOTOPE_MATCHING_EXACT
1
public static final int
ISOTOPE_MATCHING_IGNORE
2
public static final int
MARKUSH_HIT_INNER
1
public static final int
MARKUSH_HIT_ORIGINAL
0
public static final int
MATCH_COUNT_BETWEEN
0
public static final int
MATCH_COUNT_RELATION
1
public static final int
NO_ABAS
1
public static final int
NO_SCREEN
0
public static final int
POSITION_ON_0TH_HEAVY_ATOM
-2147483648
public static final int
RADICAL_MATCHING_DEFAULT
0
public static final int
RADICAL_MATCHING_EXACT
1
public static final int
RADICAL_MATCHING_IGNORE
2
public static final int
SIMILARITY
3
public static final int
STEREO_DIASTEREOMER
3
public static final int
STEREO_ENANTIOMER
4
public static final int
STEREO_EXACT
2
public static final int
STEREO_IGNORE
1
public static final int
STEREO_MODEL_COMPREHENSIVE
1
public static final int
STEREO_MODEL_DEFAULT
3
public static final int
STEREO_MODEL_GLOBAL
2
public static final int
STEREO_MODEL_LOCAL
0
public static final int
STEREO_SPECIFIC
0
public static final int
SUBSTRUCTURE
2
public static final int
SUPERSTRUCTURE
6
public static final int
TAUTOMER_SEARCH_DEFAULT
2
public static final int
TAUTOMER_SEARCH_OFF
0
public static final int
TAUTOMER_SEARCH_ON
1
public static final int
TAUTOMER_SEARCH_ON_IGNORE_TAUTOMERSTEREO
3
public static final int
UNDEF_R_MATCHING_ALL
0
public static final int
UNDEF_R_MATCHING_GROUP
2
public static final int
UNDEF_R_MATCHING_GROUP_H
3
public static final int
UNDEF_R_MATCHING_GROUP_H_EMPTY
4
public static final int
UNDEF_R_MATCHING_UNDEF_R
1
public static final int
VAGUE_BOND_DEFAULT
5
public static final int
VAGUE_BOND_LEVEL_HALF
5
public static final int
VAGUE_BOND_LEVEL1
1
public static final int
VAGUE_BOND_LEVEL2
2
public static final int
VAGUE_BOND_LEVEL3
3
public static final int
VAGUE_BOND_LEVEL4
4
public static final int
VAGUE_BOND_OFF
0
-
chemaxon.sss.formula.FormulaSearch Modifier and Type Constant Field Value public static final int
EXACT
1
public static final int
EXACT_SUBFORMULA
2
public static final int
NONE
0
public static final int
SUBFORMULA
3
-
chemaxon.sss.screen.HashCode Modifier and Type Constant Field Value public static final int
DEFAULT_RECURSION_LEVEL
4
-
chemaxon.sss.search.MarkushFeature Modifier and Type Constant Field Value public static final int
ATOMLIST
1
public static final int
BONDLIST
2
public static final int
LINKNODE
3
public static final int
MULTIBOND
4
public static final int
REPUNIT
5
public static final int
RGROUP
6
-
chemaxon.sss.search.MarkushGenerator Modifier and Type Constant Field Value public static final String
NO_UNDEF_RGROUP
"The query should contain at least one undefined R-atom."
-
chemaxon.sss.search.MolComparator Modifier and Type Constant Field Value public static final int
MAYBE_USEFUL
1
public static final int
NOT_USEFUL
2
public static final int
USEFUL
0
-
chemaxon.sss.search.RGroupDecomposition Modifier and Type Constant Field Value public static final int
COL_MOLECULE
1
public static final int
COL_SCAFFOLD
2
public static final int
HEADER_MAP
2
public static final int
HEADER_NONE
0
public static final int
HEADER_RGROUP
1
public static final String
SEPARATOR
";"
-
chemaxon.sss.search.SearchOptions Modifier and Type Constant Field Value public static final int
DEFAULT_TIMEOUT_LIMIT
120000
-
chemaxon.sss.search.options.MarkushAromaticityHandlingOption Modifier and Type Constant Field Value public static final String
OPTION_NAME_STRING
"markushAromHandling"
-
chemaxon.sss.search.options.TargetHomologyMatchingMode Modifier and Type Constant Field Value public static final String
OPTION_NAME_STRING
"targetHomologyMatchingMode"
chemaxon.standardizer.*
-
chemaxon.standardizer.AbstractStandardizerAction Modifier and Type Constant Field Value public static final String
CONFIG_PATH_KEY
"configPath"
public static final String
FORMAT_KEY
"format"
public static final String
ID_KEY
"id"
-
chemaxon.standardizer.Standardizer Modifier and Type Constant Field Value public static final String
FINAL_CLEAN_ID
"FINAL_CLEAN"
-
chemaxon.standardizer.StandardizerActionDescriptor Modifier and Type Constant Field Value public static final String
ACTIONSTRING_TOKEN
"actionStringToken"
public static final String
DESCRIPTION
"description"
public static final String
EDITOR_CLASS_NAME
"editorClassName"
public static final String
HELP_TEXT
"helpText"
public static final String
ICON_PATH
"iconPath"
public static final String
ID
"id"
public static final String
NAME
"name"
public static final String
TAGS
"tags"
public static final String
XML_TOKEN
"xmlToken"
-
chemaxon.standardizer.StandardizerActionFactory Modifier and Type Constant Field Value public static final String
DEFAULT
"default"
public static final String
DEFAULT_CONFIGURATION_PATH
"/chemaxon/standardizer/resource/defaultstandardizerconfig.xml"
public static final String
DEFAULT_CONFIGURATION_SCHEMA
"/chemaxon/standardizer/resource/availableStandardizerConfiguration.xsd"
public static final String
PRE_CONFIGURED_TRANSFORMATIONS
"/chemaxon/standardizer/resource/preconfiguredtransformations.xml"
public static final String
STANDARDIZERCONFIG_XML
"standardizerconfig.xml"
public static final String
USER_DEFINED_STANDARDIZERCONFIG_XML
"userdefinedstandardizers.xml"
-
chemaxon.standardizer.StandardizerActionInfo Modifier and Type Constant Field Value public static final String
NO_LICENSE_REQUIRED
"no license"
-
chemaxon.standardizer.actions.AbsoluteStereoAction Modifier and Type Constant Field Value public static final String
ACT_KEY
"act"
public static final String
TYPE_KEY
"type"
-
chemaxon.standardizer.actions.AliasToGroupAction Modifier and Type Constant Field Value public static final String
ABBREV_GROUPS_KEY
"Groups"
-
chemaxon.standardizer.actions.AromatizeAction Modifier and Type Constant Field Value public static final String
TYPE_KEY
"type"
-
chemaxon.standardizer.actions.ClearStereoAction Modifier and Type Constant Field Value public static final String
PROPERTY_KEY_CHIRALITY
"Chirality"
public static final String
PROPERTY_KEY_DOUBLE_BOND
"DoubleBond"
public static final String
PROPERTY_KEY_SINGLE_UP_OR_DOWN_BOND
"SingleUpOrDownBond"
public static final String
TYPE_KEY
"type"
-
chemaxon.standardizer.actions.ConvertDoubleBondsAction Modifier and Type Constant Field Value public static final String
TYPE_KEY
"type"
-
chemaxon.standardizer.actions.ConvertToEnhancedStereoAction Modifier and Type Constant Field Value public static final String
AND
"and"
public static final String
OR
"or"
public static final String
PROPERTY_KEY_ABSOLUTE
"absolute"
public static final String
PROPERTY_KEY_ABSSTEREO
"absstereo"
public static final String
PROPERTY_KEY_ENFORCE_ABS
"enforceabsstereo"
public static final String
PROPERTY_KEY_STEREO_GROUP
"defaultnonabsstereogroup"
public static final String
PROPERTY_KEY_TYPE
"type"
-
chemaxon.standardizer.actions.ExpandAction Modifier and Type Constant Field Value public static final String
STOICHIOMETRY_KEY
"data"
-
chemaxon.standardizer.actions.MapAction Modifier and Type Constant Field Value public static final String
KEEP_MAPPING
"KeepMapping"
public static final String
MAPPING_STYLE
"MappingStyle"
public static final String
MARK_BONDS
"MarkBonds"
-
chemaxon.standardizer.actions.MapReactionAction Modifier and Type Constant Field Value public static final String
KEEP_MAPPING
"KeepMapping"
public static final String
MAPPING_STYLE
"MappingStyle"
public static final String
MARK_BONDS
"MarkBonds"
-
chemaxon.standardizer.actions.RemoveExplicitHydrogensAction Modifier and Type Constant Field Value public static final String
PROPERTY_KEY_BRIDGEHEAD
"Bridgehead"
public static final String
PROPERTY_KEY_CHARGED
"Charged"
public static final String
PROPERTY_KEY_H_CONNECTED
"Hconnected"
public static final String
PROPERTY_KEY_ISOTOPIC
"Isotopic"
public static final String
PROPERTY_KEY_LONELY
"Lonely"
public static final String
PROPERTY_KEY_MAPPED
"Mapped"
public static final String
PROPERTY_KEY_METAL_CONNECTED
"Metalconnected"
public static final String
PROPERTY_KEY_POLYMER_END_GROUP
"Polymerendgroup"
public static final String
PROPERTY_KEY_RADICAL
"Radical"
public static final String
PROPERTY_KEY_SGROUP
"Sgroup"
public static final String
PROPERTY_KEY_SGROUP_END
"Sgroupend"
public static final String
PROPERTY_KEY_VALENCE_ERROR
"Valenceerror"
public static final String
PROPERTY_KEY_WEDGED
"Wedged"
-
chemaxon.standardizer.actions.RemoveFragmentAction Modifier and Type Constant Field Value public static final String
MEASUREMENT_KEY
"measure"
public static final String
METHOD_KEY
"method"
-
chemaxon.standardizer.actions.ReplaceAtomsAction Modifier and Type Constant Field Value public static final String
PROPERTY_KEY_ALLOW_VALENCE_ERROR
"allowvalenceerror"
public static final String
PROPERTY_KEY_QUERY_ATOM
"queryatom"
public static final String
PROPERTY_KEY_REPLACE_ATOM
"replaceatom"
-
chemaxon.standardizer.actions.SetHydrogenIsotopeSymbolAction Modifier and Type Constant Field Value public static final String
TYPE_KEY
"type"
-
chemaxon.standardizer.advancedactions.Clean2DAction Modifier and Type Constant Field Value public static final String
PARTIAL_CLEAN_KEY
"partialcleanneeded"
public static final String
TEMPLATE_FILE_KEY
"templatefile"
public static final String
TEMPLATES_KEY
"templates"
public static final String
TYPE_KEY
"type"
-
chemaxon.standardizer.advancedactions.CreateGroupAction Modifier and Type Constant Field Value public static final String
GROUP_LIST_KEY
"grouplist"
-
chemaxon.standardizer.advancedactions.RemoveSolventsAction Modifier and Type Constant Field Value public static final String
DEFAULT_SOLVENT_DICTIONARY_PATH
"/chemaxon/standardizer/resource/solvent_dictionary.sdf"
public static final String
SOLVENT_ID_PROPERTY
"ID"
public static final String
SOLVENT_LIST_KEY
"solventlist"
public static final String
USE_DEFAULT_SOLVENTS_KEY
"usedefaultsolvents"
-
chemaxon.standardizer.advancedactions.StripSaltsAction Modifier and Type Constant Field Value public static final String
DEFAULT_SALT_DICTIONARY_PATH
"/chemaxon/standardizer/resource/salt_dictionary.sdf"
public static final String
DONT_REMOVE_LAST_COMPONENT_KEY
"dontremovelastcomponent"
public static final String
SALT_ID_PROPERTY
"ID"
public static final String
SALT_LIST_KEY
"saltlist"
public static final String
USE_DEFAULT_SALTS_KEY
"usedefaultsalts"
-
chemaxon.standardizer.advancedactions.TransformAction Modifier and Type Constant Field Value public static final String
EXACT_KEY
"exact"
public static final String
SEARCH_OPTIONS_KEY
"searchoptions"
public static final String
STRUCTURE_KEY
"structure"
-
chemaxon.standardizer.configuration.reader.StandardizerActionStringReader Modifier and Type Constant Field Value public static final String
ENTRY_SEPARATOR
"\\.\\."
public static final String
GROUP_END_TOKEN
"}"
public static final String
GROUP_SEPARATOR
","
public static final String
GROUP_START_TOKEN
"{"
public static final String
KEY_VALUE_SEPARATOR
"="
public static final String
PARAM_SEPARATOR
":"
-
chemaxon.standardizer.configuration.reader.StandardizerConfigurationReader Modifier and Type Constant Field Value public static final String
DEFAULT_STANDARDIZERS_CONFIG_PATH
"/chemaxon/standardizer/resource/default.xml"
chemaxon.struc.*
-
chemaxon.struc.HybridizationStateConsts Modifier and Type Constant Field Value public static final int
HS_S
1
public static final int
HS_SP
2
public static final int
HS_SP2
3
public static final int
HS_SP3
4
public static final int
HS_UNKNOWN
0
-
chemaxon.struc.MDocument Modifier and Type Constant Field Value public static final int
SETCOLOR_COLORLESS
2
public static final int
SETCOLOR_DEFAULT
0
public static final int
SETCOLOR_SPECIFIED
1
-
chemaxon.struc.MObject Modifier and Type Constant Field Value public static final int
TRANSFORM_DISTORT
1
-
chemaxon.struc.MolAtom Modifier and Type Constant Field Value public static final int
AAMAP_MASK
268173312
public static final int
AAMAP_MAX
1023
public static final int
AAMAP_OFF
18
public static final int
ALIPHATIC
2
public static final int
ALL_H
49151
public static final double
ANGLE_STEP
0.2617993877991494
public static final int
ANY
131
public static final int
AROMATIC
1
public static final int
AROMATIC_OR_ALIPHATIC
3
public static final int
ATOM_TYPE_COUNT
139
public static final int
ATOM_TYPE_MAX
138
public static final int
ATTACH_BOTH
3
public static final int
ATTACH_NONE
0
public static final int
ATTACH_UNKNOWN
-1
public static final int
ATTACH1
1
public static final int
ATTACH2
2
public static final int
BRIDGEHEAD_H
4096
public static final int
CHARGED_H
4
public static final int
CTSPECIFIC_H
128
public static final int
ELEMENT_COUNT
118
public static final int
EMPTY
0
public static final int
FIX_CHARGE
65536
public static final int
HBONDED_H
8192
public static final int
HCONNECTED_H
64
public static final int
HETERO
132
public static final int
HS_S
1
public static final int
HS_SP
2
public static final int
HS_SP2
3
public static final int
HS_SP3
4
public static final int
HS_UNKNOWN
0
public static final int
ISOTOPE_H
2
public static final int
LDIR_ABOVE
2
public static final int
LDIR_BELOW
3
public static final int
LDIR_LEFT
1
public static final int
LDIR_RIGHT
0
public static final int
LIST
128
public static final int
LONELY_H
1
public static final int
LP
130
public static final int
MAPPED_H
16
public static final int
METALCONNECTED_H
32768
public static final int
MULTICENTER
137
public static final int
NOTLIST
129
public static final int
OMIT_POSTCLEAN
16384
public static final int
POLYMERENDGROUP_H
256
public static final int
PSEUDO
136
public static final int
RAD_COUNT_MASK
3072
public static final int
RAD_MASK
15360
public static final int
RAD_OFF
10
public static final int
RAD1
1
public static final int
RAD2
2
public static final int
RAD2_SINGLET
6
public static final int
RAD2_TRIPLET
10
public static final int
RAD3
3
public static final int
RAD3_DOUBLET
7
public static final int
RAD3_QUARTET
11
public static final int
RAD4
4
public static final char
RADICAL_CHAR
8226
public static final int
RADICAL_H
8
public static final int
RESSEQ_MAX
8191
public static final int
RESTYPE_MAX
63
public static final int
RGROUP
134
public static final int
RGROUP_ATTACHMENT
138
public static final int
RGROUP_MAX
32767
public static final int
RXNSTEREO_INVERSION
1
public static final int
RXNSTEREO_NONE
0
public static final int
RXNSTEREO_RETENTION
2
public static final int
SETSEQ_MAX
63
public static final int
SGROUP
135
public static final int
SGROUP_H
2048
public static final int
SGROUPEND_H
512
public static final int
SMARTS_H_DAYLIGHT_COMP_MODE
1
public static final int
SMARTS_H_MARVIN_COMP_MODE
0
public static final int
STAR
133
public static final int
SYM_CX
64
public static final int
SYM_EXPLH
4
public static final int
SYM_IMPLH
2
public static final int
SYM_MOLEX
32
public static final int
SYM_NEUTRAL
8
public static final int
SYM_SMARTS
16
public static final int
SYM_SQBRACKETS
1
public static final int
UNSPECIFIED_AROMATICITY
0
public static final int
VALENCE_CHECKED
16384
public static final int
VALENCE_ERROR
32768
public static final int
VALENCEERROR_H
1024
public static final int
WEDGED_H
32
-
chemaxon.struc.MolBond Modifier and Type Constant Field Value public static final int
ANY
0
public static final int
AROMATIC
4
public static final int
BOLD
1073741824
public static final double
CCLENGTH
1.54
public static final int
CONJUGATED
8
public static final int
COORDINATE
9
public static final int
DOUBLE_OR_AROMATIC
7
public static final int
DOWN
32
public static final int
HASHED
-2147483648
public static final int
HYDROGEN
10
public static final int
RC_CHANGE
12288
public static final int
RC_MAKE_AND_CHANGE
16384
public static final int
RC_MAKE_OR_BREAK
8192
public static final int
RC_NOT_CENTER
20480
public static final int
RC_NOT_MODIFIED
24576
public static final int
RC_REACTING_CENTER
4096
public static final int
RC_UNMAPPED
28672
public static final int
REACTING_CENTER_MASK
61440
public static final int
SETSEQ_MAX
63
public static final int
SETSEQ_OFF
24
public static final int
SINGLE_OR_AROMATIC
6
public static final int
SINGLE_OR_DOUBLE
5
public static final int
STEREO_MASK
1008
public static final int
STEREO1_MASK
48
public static final int
STEREO2_CARE
512
public static final int
TOPOLOGY_CHAIN
2048
public static final int
TOPOLOGY_MASK
3072
public static final int
TOPOLOGY_RING
1024
public static final int
TYPE_MASK
15
public static final int
UP
16
public static final int
WAVY
48
-
chemaxon.struc.Molecule Modifier and Type Constant Field Value public static final int
DEFAULT_UNGROUP
0
public static final int
RECURSIVE_UNGROUP
1
public static final int
RM_KEEP_LEAVINGGROUPS
128
public static final int
RMCLEANUP_FROMSGROUPS
16
public static final int
RMCLEANUP_SGROUPATOMS
8
protected static final int
RMSG_DEFAULT
0
protected static final int
RMSG_KEEP_CHILDREN
1
protected static final int
RMSG_KEEP_MULTICENTER
4
protected static final int
RMSG_KEEP_PARENT
2
-
chemaxon.struc.MoleculeGraph Modifier and Type Constant Field Value public static final int
AROM_AMBIGUOUS
5
public static final int
AROM_BASIC
1
public static final int
AROM_CHUCKEL
6
public static final int
AROM_GENERAL
2
public static final int
AROM_LOOSE
3
public static final int
AROM_SUBSTRUCTURE
4
protected static final int
AUTO_UNGROUP
16
public static final int
CACHE_REMOVE_ALL
0
public static final int
CACHE_REMOVE_AROMATAMODULE
8
public static final int
CACHE_REMOVE_CACHEMEMORY
1
public static final int
CACHE_REMOVE_GRINVMODULE
2
public static final int
CACHE_REMOVE_PARITYMODULE
4
public static final int
CACHE_REMOVE_SSSRMODULE
16
public static final int
CACHE_REMOVE_TABS
32
public static final int
DEAROM_GENERAL
0
public static final int
DEAROM_HUCKELCHECK
1
public static final int
DEAROM_HUCKELCHECK_EX
2
protected static final int
DIM_MASK
3
public static final int
FRAG_BASIC
0
public static final int
FRAG_KEEPING_MULTICENTERS
1
public static final int
FRAG_KEEPING_SGROUPS
2
public static final int
FRAG_TYPE_COUNT
3
public static final int
GRINV_DONT_STORE
8
public static final int
GRINV_NOHYDROGEN
1
public static final int
GRINV_OLDSTEREO
4
public static final int
GRINV_STEREO
2
public static final int
GRINV_USEMAPS
32
public static final int
GRINV_VALUE_OPTIONS
39
protected static final int
INITIAL_CAPACITY
32
public static final String
INVALID_LINKNODE_MESSAGE
"Link node cannot be created from the specified configuration!"
public static final int
MIN_RING_SIZE_FOR_TRANS_DB
8
public static final int
OMIT_POSTCLEAN
16384
public static final int
RMCLEANUP_ALL
-161
public static final int
RMCLEANUP_EDGES
1
protected static final int
RMCLEANUP_FIXCOMPONENT
32
public static final int
RMCLEANUP_MOBJECT
4
public static final int
RMCLEANUP_NONE
0
public static final int
RMCLEANUP_PARENTDOC
64
public static final int
RMCLEANUP_STEREO
2
protected static final int
VALENCE_CHECK
32
protected static final int
VALENCE_CHECK_AMBIGUOUS
64
-
chemaxon.struc.MProp Modifier and Type Constant Field Value public static final int
COORDDEP
1
public static final String
TYPE_3D_COORDS
"MHCoords3D"
public static final String
TYPE_ARRAY_BYTE
"byte"
public static final String
TYPE_ARRAY_DOUBLE
"double"
public static final String
TYPE_ARRAY_INTEGER
"integer"
public static final String
TYPE_BOOLEAN
"boolean"
public static final String
TYPE_COLLECTION_HASH
"MHashProp"
public static final String
TYPE_COLLECTION_LIST
"MListProp"
public static final String
TYPE_CONFORMER_DESCRIPTOR
"chemaxon.marvin.modelling.struc.ConformersDescriptor"
public static final String
TYPE_DOUBLE
"double"
public static final String
TYPE_FONT
"mfont"
public static final String
TYPE_INTEGER
"integer"
public static final String
TYPE_MDOCUMENT_PROP
"MDocument"
public static final String
TYPE_MOLECULE
"Molecule"
public static final String
TYPE_OBJECT
"object"
public static final String
TYPE_STRING
"string"
public static final String
TYPE_VOLUMETRIC_DATA
"VolumetricData"
-
chemaxon.struc.NoStructure Modifier and Type Constant Field Value public static final String
LABEL
"\\bold{No Structure}"
-
chemaxon.struc.RgMolecule Modifier and Type Constant Field Value public static final String
DEFAULT_RLOGIC_RANGE
""
public static final int
RG_ID_MASK
32767
public static final int
RG_ID2_FLAG
32768
public static final int
RG_ID2_MASK
2147418112
public static final int
RG_ID2_OFF
16
public static final int
RG_RESTH
-2147483648
-
chemaxon.struc.RxnMolecule Modifier and Type Constant Field Value public static final int
AGENTS
2
public static final int
EQUILIBRIUM
3
public static final int
PRODUCTS
1
public static final int
REACTANTS
0
public static final int
REGULAR_DOUBLE
2
public static final int
REGULAR_SINGLE
0
public static final int
RESONANCE
1
public static final int
RETROSYNTHETIC
2
public static final int
RGROUPED
4
public static final int
TWO_HEADED_DOUBLE
3
public static final int
TWO_HEADED_SINGLE
1
public static final int
TYPE_COUNT
3
public static final int
TYPE_MASK
3
-
chemaxon.struc.Sgroup Modifier and Type Constant Field Value public static final int
CHARGE_ON_ATOMS
1
public static final int
CHARGE_ON_GROUP
2
public static final int
PR_ATSYMS
1
protected static final int
RA_IN_EXPAND
1
protected static final int
RA_REMOVE_EXCEPT_RU
2
public static final int
SCN_EITHER_UNKNOWN
0
public static final int
SCN_HEAD_TO_HEAD
1
public static final int
SCN_HEAD_TO_TAIL
2
public static final int
SGROUP_TYPE_COUNT
16
public static final int
SORT_CHILD_PARENT
2
public static final int
SORT_PARENT_CHILD
1
public static final int
SST_ALTERNATING
1
public static final int
SST_BLOCK
3
public static final int
SST_RANDOM
2
public static final int
ST_AMINOACID
16
public static final int
ST_ANY
11
public static final int
ST_COMPONENT
13
public static final int
ST_COPOLYMER
5
public static final int
ST_CROSSLINK
6
public static final int
ST_DATA
10
public static final int
ST_FORMULATION
9
public static final int
ST_GENERIC
12
public static final int
ST_GRAFT
15
public static final int
ST_MER
4
public static final int
ST_MIXTURE
8
public static final int
ST_MODIFICATION
7
public static final int
ST_MONOMER
3
public static final int
ST_MULTICENTER
14
public static final int
ST_MULTIPLE
1
public static final int
ST_SRU
2
public static final int
ST_SUPERATOM
0
public static final int
XSTATE_C
2
public static final int
XSTATE_NONE
0
public static final int
XSTATE_X
1
public static final int
XSTATE_XC
3
-
chemaxon.struc.Smolecule Modifier and Type Constant Field Value public static final int
A_ALL
4095
public static final int
A_ASTEREO
3072
public static final int
A_ATOMMAP
256
public static final int
A_BOND
1
public static final int
A_CHARGE
2
public static final int
A_CHIRALITY
2048
public static final int
A_EXPLH
64
public static final int
A_HYBRIDIZATION
8
public static final int
A_IMPLH
32
public static final int
A_MASSNO
16
public static final int
A_PARITY
1024
public static final int
A_RADICAL
4
public static final int
A_RGROUP
512
public static final int
A_VALENCE
128
public static final int
RGROUP_MAX
32767
-
chemaxon.struc.StereoConstants Modifier and Type Constant Field Value public static final int
ANTI
1024
public static final int
ATOMSTEREO_EITHER
64
public static final int
ATOMSTEREO_MASK
96
public static final int
ATOMSTEREO_NONE
0
public static final int
ATOMSTEREO_SPECIFIC
32
public static final int
CHIRALITY_M
256
public static final int
CHIRALITY_MASK
24
public static final int
CHIRALITY_P
128
public static final int
CHIRALITY_r
32
public static final int
CHIRALITY_R
8
public static final int
CHIRALITY_s
64
public static final int
CHIRALITY_S
16
public static final int
CHIRALITYSUPPORT_ALL
2
public static final int
CHIRALITYSUPPORT_ALL_POSSIBLE
3
public static final int
CHIRALITYSUPPORT_NONE
0
public static final int
CHIRALITYSUPPORT_SELECTED
1
public static final int
CIS
128
public static final int
CIS_TRANS
192
public static final int
CTUMASK
448
public static final int
CTUNKNOWN
512
public static final int
CTUNSPEC
256
public static final int
DBS_ALL
0
public static final int
DBS_MARKED
1
public static final int
DBS_NONE
2
public static final int
ENDO
2048
public static final int
EXO
4096
public static final int
PARITY_ALLENE
2
public static final int
PARITY_EITHER
3
public static final int
PARITY_EVEN
2
public static final int
PARITY_MASK
7
public static final int
PARITY_NONE
0
public static final int
PARITY_ODD
1
public static final int
PARITY_TETRAHEDRAL
1
public static final int
PARITY_UNSPEC
4
public static final int
STGRP_ABS
1
public static final int
STGRP_AND
3
public static final int
STGRP_NONE
0
public static final int
STGRP_OR
2
public static final int
SYN
512
public static final int
TRANS
64
-
chemaxon.struc.graphics.MBracket Modifier and Type Constant Field Value public static final double
ARC_BRACES
75.0
public static final double
ARC_ROUND
90.0
public static final int
T_BRACES
2
public static final int
T_CHEVRONS
3
public static final int
T_DOUBLE
5
public static final int
T_ROUND
0
public static final int
T_SINGLE
4
public static final int
T_SQUARE
1
-
chemaxon.struc.graphics.MEFlow Modifier and Type Constant Field Value public static final int
E_SINK
1
public static final int
E_SOURCE
0
public static final String
lonePairState
"lonePairState"
public static final String
radicalState
"radicalState"
-
chemaxon.struc.graphics.MEFlowBasePoint Modifier and Type Constant Field Value public static final String
electronRadious
"electronRadious"
public static final String
lonePairCoordsLabel
"lonePairCoords"
public static final String
lonePairRealCoordsLabel
"lonePairRealCoords"
public static final String
radicalCoordsLabel
"radicalCoords"
-
chemaxon.struc.graphics.MFont Modifier and Type Constant Field Value public static final int
BOLD
1
public static final int
ITALIC
2
public static final int
PLAIN
0
-
chemaxon.struc.graphics.MPolyline Modifier and Type Constant Field Value public static final int
ARROW_BACK_FLAG
1
public static final int
ARROW_CROSSED_FLAG
64
public static final int
ARROW_CURVED_FLAG
128
public static final int
ARROW_DASHED_FLAG
32
public static final int
ARROW_EQUILIBRIUM_FLAG
16
public static final int
ARROW_GROUP1_MASK
24
public static final int
ARROW_GROUP2_MASK
224
public static final int
ARROW_HALF_LEFT
2
public static final int
ARROW_HALF_MASK
6
public static final int
ARROW_HALF_RIGHT
4
public static final int
ARROW_RETROSYNTHETIC_FLAG
8
public static final int
CLOSED_FLAG
1
public static final double
DEFAULT_ARROW_HEAD_LENGTH
0.6
public static final double
DEFAULT_ARROW_HEAD_WIDTH
0.4
public static final double
DEFAULT_EQUILIBRIUM_HEAD_WIDTH
3.5
public static final double
DEFAULT_MAX_CROSS_SIZE
1.75
public static final double
DEFAULT_RETROSYNTHETIC_HEAD_WIDTH
3.0
public static final double
DEFAULT_THICKNESS
0.0625
public static final int
HEAD
1
public static final int
TAIL
0
public static final int
THICKNESS_SET_FLAG
2
-
chemaxon.struc.graphics.MRectangle Modifier and Type Constant Field Value public static final int
P_CENTER
4
public static final int
P_E
6
public static final int
P_N
5
public static final int
P_NE
1
public static final int
P_NW
0
public static final int
P_S
7
public static final int
P_SE
2
public static final int
P_SW
3
public static final int
P_W
8
public static final int
T_NOROT
1
-
chemaxon.struc.graphics.MTextAttributes Modifier and Type Constant Field Value public static final int
A_ALL
1023
public static final int
A_BOLD
32
public static final int
A_DX
256
public static final int
A_DY
512
public static final int
A_FONT
4
public static final int
A_FONT_BITS
124
public static final int
A_FONTFAMILY
8
public static final int
A_FONTSIZE
16
public static final int
A_FOREGROUND
2
public static final int
A_ITALIC
64
public static final int
A_SCALE
128
public static final int
A_SUBLEVEL
1
public static final double
DEFAULT_SUPERSCRIPT_DELTAY
0.6
public static final double
DEFAULT_SUPERSCRIPT_SCALE
0.7
public static final int
DEFAULT_SUPERSCRIPT_SUBLEVEL
1
-
chemaxon.struc.graphics.MTextBox Modifier and Type Constant Field Value public static final int
ALIGN_BOTTOM
2
public static final int
ALIGN_CENTER
1
public static final int
ALIGN_LEFT
0
public static final int
ALIGN_RIGHT
2
public static final int
ALIGN_TOP
0
public static final int
FONT_DEFAULT_SCALE
10
-
chemaxon.struc.sgroup.DataSgroup Modifier and Type Constant Field Value public static final int
DT_FORMATTED
1
public static final int
DT_NUMERIC
2
public static final int
DT_TEXT
3
public static final int
DT_UNSPEC
0
public static final int
DT_URL
4
public static final int
HIDDEN
-2
-
chemaxon.struc.sgroup.Expandable Modifier and Type Constant Field Value public static final int
COORDS_UPDATE
16
public static final int
DEFAULT_OPTIONS
0
public static final int
FAST_COORDS
8
public static final int
LEAVE_COORDS_UNCHANGED
2
public static final int
MDL_EXPAND
1
public static final int
NONRECURSIVE_EXPAND
4
public static final int
REVERSIBLE_EXPAND
2
-
chemaxon.struc.sgroup.SgroupAtom Modifier and Type Constant Field Value public static final int
LABEL_AUTO
-1
public static final int
LABEL_DEFAULT
0
chemaxon.util.*
-
chemaxon.util.ConnectionHandler Modifier and Type Constant Field Value public static final String
DEFAULT_PROPERTY_TABLE
"JChemProperties"
-
chemaxon.util.ErrorHandler Modifier and Type Constant Field Value public static final int
CLASS_NOT_FOUND_ERROR
7
public static final int
DATABASE_SEARCH_ERROR
3
public static final int
ILLEGAL_ACCESS_ERROR
9
public static final int
INSTANTIATION_ERROR
8
public static final int
IO_ERROR
5
public static final int
MAX_SEARCH_FREQUENCY_EXCEEDED_ERROR
2
public static final int
MOL_FORMAT_ERROR
4
public static final int
NO_ERROR
0
public static final int
SQL_ERROR
10
public static final int
UNIDENTIFIED_ERROR
1
-
chemaxon.util.HitColoringAndAlignmentOptions Modifier and Type Constant Field Value public static final int
DISSIMILARITY
2
public static final int
MARKUSH_REDUCTION
1
public static final int
MARKUSH_REDUCTION_HGEXPANSION
2
public static final int
ORIGINAL_MARKUSH
0
public static final String
QUERY_LABEL
"Query"
public static final int
SIMILARITY
3
public static final String
SIMILARITY_LABEL
"Score"
public static final int
SIMILARITY_OFF
1
public static final String
TARGET_LABEL
"Target"
-
chemaxon.util.HitDisplayTool Modifier and Type Constant Field Value public static final int
HIT_ATOM_SET
1
public static final int
HIT_BOND_SET
0
public static final int
NON_HIT_ATOM_SET
0
public static final int
NON_HIT_BOND_SET
1
-
chemaxon.util.HitDisplayUtil Modifier and Type Constant Field Value public static final String
PROP_ALIGNHIT
"alignHit"
-
chemaxon.util.iterator.IteratorFactory Modifier and Type Constant Field Value public static final int
INCLUDE_ALL_ATOMS
0
public static final int
INCLUDE_ALL_BONDS
0
public static final int
INCLUDE_CHEMICAL_ATOMS
14
public static final int
INCLUDE_CHEMICAL_ATOMS_ONLY
14
public static final int
REPLACE_COORDINATE_BONDS
4
public static final int
SKIP_COORDINATE_BONDS
1
public static final int
SKIP_COVALENT_BONDS
2
public static final int
SKIP_EXPLICIT_H
1
public static final int
SKIP_LONE_PAIR
4
public static final int
SKIP_MULTICENTER
2
public static final int
SKIP_PSEUDO_ATOM
8
com.chemaxon.*
-
com.chemaxon.calculations.util.CmdlineUtils Modifier and Type Constant Field Value public static final String
UTF8ENCODING
"UTF-8"
-
com.chemaxon.descriptors.common.BinaryVectors Modifier and Type Constant Field Value public static final int
BYTES_IN_INT
4
public static final int
BYTES_IN_LONG
8
public static final int
LOG2_BYTES_IN_INT
2
public static final int
LOG2_BYTES_IN_LONG
3
-
com.chemaxon.descriptors.fingerprints.cfp.CfpParameters Modifier and Type Constant Field Value public static final int
DEFAULT_BITS_TO_SET_FOR_PATTERNS
3
public static final int
DEFAULT_CFP_LENGTH
1024
public static final int
DEFAULT_CFP_MAX_PATTERN_LENGTH
7
public static final boolean
DEFAULT_CONSIDER_RINGS
true
-
com.chemaxon.descriptors.fingerprints.ecfp.EcfpParameters Modifier and Type Constant Field Value public static final int
DEFAULT_ECFP_DIAMETER
4
public static final int
DEFAULT_ECFP_LENGTH
1024
-
com.chemaxon.descriptors.fingerprints.maccs.MaccsParameters Modifier and Type Constant Field Value public static final int
DEFAULT_MACCS_LENGTH
192
-
com.chemaxon.descriptors.vectors.binary.BvParameters Modifier and Type Constant Field Value public static final int
DEFAULT_LENGTH
1024
-
com.chemaxon.descriptors.vectors.floats.FvParameters Modifier and Type Constant Field Value public static final int
DEFAULT_LENGTH
1
public static final double
DEFAULT_SCALED_MAX
1.0
public static final double
DEFAULT_SCALED_MIN
0.0
-
com.chemaxon.mapper.AutoMapper Modifier and Type Constant Field Value public static final int
DEFAULT_CACHE_SIZE
1000
public static final String
DEFAULT_CACHE_SIZE_PROPERTY
"chemaxon.automapper.AutoMapper.cacheSize"
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com.chemaxon.search.mcs.MaxCommonSubstructure Modifier and Type Constant Field Value public static final long
DEFAULT_RANDOM_SEED
308051301241514L
-
com.chemaxon.search.mcs.McsSearchOptions Modifier and Type Constant Field Value public static final int
DEFAULT_MAX_CONSIDERED_RING_SIZE
8